Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02122

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,383,264	-				+0.2
2,383,332	-		MIT1002_02120	0.26	-0.8
2,383,341	-		MIT1002_02120	0.29	+1.5
2,383,362	-		MIT1002_02120	0.35	-0.6
2,383,399	-		MIT1002_02120	0.45	+2.5
2,383,562	+				-0.7
2,383,629	+				-2.1
2,383,647	-				-1.1
2,383,664	+				+0.3
2,383,664	+				-0.1
2,383,664	+				+0.4
2,383,664	+				-1.0
2,383,672	-		MIT1002_02121	0.12	-0.7
2,383,672	-		MIT1002_02121	0.12	+0.0
2,383,672	-		MIT1002_02121	0.12	+0.4
2,383,672	-		MIT1002_02121	0.12	-2.5
2,383,672	-		MIT1002_02121	0.12	-0.0
2,383,674	+		MIT1002_02121	0.13	-2.7
2,383,682	-		MIT1002_02121	0.15	+0.8
2,383,682	-		MIT1002_02121	0.15	-1.7
2,383,682	-		MIT1002_02121	0.15	+1.2
2,383,732	+		MIT1002_02121	0.29	-0.3
2,383,747	-		MIT1002_02121	0.33	+0.0
2,383,765	+		MIT1002_02121	0.38	+0.2
2,383,773	-		MIT1002_02121	0.40	-0.5
2,383,773	-		MIT1002_02121	0.40	-1.6
2,383,863	+		MIT1002_02121	0.66	-0.3
2,383,915	+		MIT1002_02121	0.80	-0.0
2,383,944	+		MIT1002_02121	0.88	+1.0
2,383,948	-		MIT1002_02121	0.89	+0.2
2,384,013	-				-1.5
2,384,013	-				-1.2
2,384,033	-				+2.5
2,384,147	+				-0.3
2,384,147	+				-1.5
2,384,155	-		MIT1002_02122	0.10	+3.3
2,384,155	-		MIT1002_02122	0.10	-2.7
2,384,157	+		MIT1002_02122	0.11	-0.4
2,384,205	-		MIT1002_02122	0.22	-0.5
2,384,224	-		MIT1002_02122	0.27	-0.8
2,384,234	-		MIT1002_02122	0.29	+0.7
2,384,234	-		MIT1002_02122	0.29	-0.8
2,384,234	-		MIT1002_02122	0.29	-1.3
2,384,280	+		MIT1002_02122	0.40	+0.7
2,384,341	-		MIT1002_02122	0.54	-2.1
2,384,392	+		MIT1002_02122	0.66	+1.0
2,384,397	+		MIT1002_02122	0.68	-0.3
2,384,400	-		MIT1002_02122	0.68	-1.3
2,384,426	-		MIT1002_02122	0.74	+0.7
2,384,452	+		MIT1002_02122	0.81	-1.7
2,384,452	+		MIT1002_02122	0.81	-0.5
2,384,463	+		MIT1002_02122	0.83	-0.3
2,384,471	-		MIT1002_02122	0.85	+0.8
2,384,498	-				+0.3
2,384,533	-				-1.1
2,384,640	-				+0.1
2,384,780	+				-0.9
2,384,810	+		MIT1002_02123	0.15	-0.9
2,384,810	+		MIT1002_02123	0.15	+0.5
2,384,810	+		MIT1002_02123	0.15	-1.1
2,384,818	-		MIT1002_02123	0.17	-0.3
2,384,821	+		MIT1002_02123	0.18	-0.4
2,384,868	+		MIT1002_02123	0.27	-1.9
2,384,877	-		MIT1002_02123	0.29	+1.3
2,385,150	+		MIT1002_02123	0.87	-3.1
2,385,163	-		MIT1002_02123	0.89	-1.2
2,385,220	+				-0.1
2,385,228	-				-0.1
2,385,244	+				-0.6
2,385,275	-				-0.1
2,385,342	+				+2.2
2,385,342	+				-0.1
2,385,342	+				+1.2
2,385,342	+				-0.1
2,385,342	+				+0.6
2,385,342	+				+0.2
2,385,342	+				+0.8
2,385,342	+				-0.2
2,385,349	-				-0.6
2,385,350	-				+0.4
2,385,350	-				-0.4
2,385,350	-				+0.4
2,385,350	-				-2.0
2,385,455	+				-0.6
2,385,455	+				+0.8
2,385,455	+				-0.5
2,385,463	-		MIT1002_02124	0.10	-0.1
2,385,463	-		MIT1002_02124	0.10	+0.2
2,385,463	-		MIT1002_02124	0.10	-0.5
2,385,463	-		MIT1002_02124	0.10	-0.5
2,385,463	-		MIT1002_02124	0.10	+0.3
2,385,463	-		MIT1002_02124	0.10	-0.5
2,385,463	-		MIT1002_02124	0.10	+0.0
2,385,465	+		MIT1002_02124	0.11	-1.1
2,385,524	-		MIT1002_02124	0.14	+0.7