Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02086

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,348,110	+		MIT1002_02085	0.63	-0.5
2,348,220	+		MIT1002_02085	0.74	+0.4
2,348,244	+		MIT1002_02085	0.76	+0.9
2,348,249	+		MIT1002_02085	0.76	+1.3
2,348,252	-		MIT1002_02085	0.77	+0.4
2,348,252	-		MIT1002_02085	0.77	-0.4
2,348,252	-		MIT1002_02085	0.77	-0.3
2,348,252	-		MIT1002_02085	0.77	-2.4
2,348,252	-		MIT1002_02085	0.77	-1.3
2,348,252	-		MIT1002_02085	0.77	-0.3
2,348,268	+		MIT1002_02085	0.78	-0.1
2,348,312	+		MIT1002_02085	0.83	-2.2
2,348,391	-				-0.2
2,348,429	-				+0.9
2,348,449	-				-0.4
2,348,533	+				-0.7
2,348,533	+				+2.3
2,348,541	-				-0.4
2,348,541	-				-0.5
2,348,730	+				-1.2
2,348,924	+				-0.3
2,348,992	-		MIT1002_02086	0.10	-0.7
2,349,056	+		MIT1002_02086	0.14	+0.2
2,349,064	-		MIT1002_02086	0.14	-1.0
2,349,066	+		MIT1002_02086	0.15	+1.1
2,349,164	-		MIT1002_02086	0.20	-1.9
2,349,171	+		MIT1002_02086	0.21	-0.7
2,349,202	-		MIT1002_02086	0.23	-1.2
2,349,275	+		MIT1002_02086	0.27	+0.4
2,349,283	-		MIT1002_02086	0.27	+1.2
2,349,441	-		MIT1002_02086	0.37	-0.1
2,349,497	-		MIT1002_02086	0.40	+0.2
2,349,565	-		MIT1002_02086	0.44	-0.9
2,349,575	-		MIT1002_02086	0.45	+2.2
2,349,575	-		MIT1002_02086	0.45	-0.5
2,349,575	-		MIT1002_02086	0.45	-1.4
2,349,575	-		MIT1002_02086	0.45	-1.0
2,349,575	-		MIT1002_02086	0.45	-1.6
2,349,575	-		MIT1002_02086	0.45	-0.2
2,349,651	-		MIT1002_02086	0.49	-1.4
2,349,658	+		MIT1002_02086	0.49	-0.0
2,349,706	-		MIT1002_02086	0.52	-0.7
2,349,720	-		MIT1002_02086	0.53	-0.4
2,349,798	-		MIT1002_02086	0.58	+0.4
2,349,812	-		MIT1002_02086	0.59	-0.9
2,349,817	+		MIT1002_02086	0.59	-1.6
2,349,825	-		MIT1002_02086	0.59	+1.6
2,349,875	+		MIT1002_02086	0.62	-0.6
2,349,875	+		MIT1002_02086	0.62	-1.5
2,349,875	+		MIT1002_02086	0.62	+0.7
2,349,883	-		MIT1002_02086	0.63	-1.7
2,349,883	-		MIT1002_02086	0.63	-0.3
2,349,883	-		MIT1002_02086	0.63	-0.5
2,349,930	-		MIT1002_02086	0.65	+0.0
2,349,960	+		MIT1002_02086	0.67	+0.5
2,349,968	-		MIT1002_02086	0.68	+1.1
2,349,968	-		MIT1002_02086	0.68	-0.0
2,349,975	+		MIT1002_02086	0.68	+0.4
2,350,044	-		MIT1002_02086	0.72	-0.6
2,350,049	+		MIT1002_02086	0.72	-1.5
2,350,057	-		MIT1002_02086	0.73	-0.5
2,350,100	+		MIT1002_02086	0.76	-0.9
2,350,108	-		MIT1002_02086	0.76	+0.2
2,350,117	-		MIT1002_02086	0.77	+0.8
2,350,214	-		MIT1002_02086	0.82	-1.0
2,350,216	+		MIT1002_02086	0.82	+0.2
2,350,224	-		MIT1002_02086	0.83	-1.1
2,350,224	-		MIT1002_02086	0.83	-2.0
2,350,279	-		MIT1002_02086	0.86	+0.3
2,350,281	+		MIT1002_02086	0.86	-2.4
2,350,343	+		MIT1002_02086	0.90	-0.1
2,350,344	+		MIT1002_02086	0.90	+0.1
2,350,429	-				-0.7
2,350,429	-				-2.2
2,350,450	+				+0.3
2,350,462	+				+0.5
2,350,463	+				-1.4
2,350,537	+				+0.5
2,350,584	-				-0.2
2,350,597	+				-1.0
2,350,605	-				-0.0
2,350,605	-				-0.6
2,350,610	-				-0.4
2,350,610	-				-1.3
2,350,610	-				+0.3
2,350,671	+				-0.7
2,350,749	+				-0.7
2,350,884	-		MIT1002_02087	0.18	-0.5
2,350,892	-		MIT1002_02087	0.21	+0.9
2,350,899	+		MIT1002_02087	0.24	+0.8
2,351,032	-		MIT1002_02087	0.75	-0.7
2,351,089	+				-0.3
2,351,116	+				-0.1
2,351,125	+				+0.4
2,351,125	+				-3.2
2,351,130	+				+1.9
2,351,180	+				+0.7
2,351,206	+				-0.6
2,351,236	-		MIT1002_02088	0.10	+1.9
2,351,329	-		MIT1002_02088	0.19	+0.8
2,351,394	-		MIT1002_02088	0.26	+0.7