Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01919

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
2,125,273	-		MIT1002_01917	0.56	-0.0
2,125,350	+		MIT1002_01917	0.67	-1.2
2,125,350	+		MIT1002_01917	0.67	-0.2
2,125,358	-		MIT1002_01917	0.69	+1.1
2,125,519	+				-0.3
2,125,521	+				-0.9
2,125,681	+				-0.5
2,125,759	-		MIT1002_01918	0.24	-0.4
2,125,823	+		MIT1002_01918	0.40	+0.0
2,125,842	-		MIT1002_01918	0.44	-0.9
2,125,880	+		MIT1002_01918	0.54	+0.9
2,125,958	+		MIT1002_01918	0.73	+0.9
2,126,085	-				-0.4
2,126,163	-				+1.3
2,126,163	-				-0.6
2,126,193	+				+1.8
2,126,338	-		MIT1002_01919	0.15	+0.1
2,126,367	+		MIT1002_01919	0.18	+1.6
2,126,372	+		MIT1002_01919	0.19	+0.8
2,126,375	-		MIT1002_01919	0.19	-1.5
2,126,385	-		MIT1002_01919	0.20	-0.1
2,126,396	+		MIT1002_01919	0.21	+0.4
2,126,396	+		MIT1002_01919	0.21	-0.6
2,126,411	+		MIT1002_01919	0.23	+0.2
2,126,453	-		MIT1002_01919	0.28	+1.3
2,126,463	-		MIT1002_01919	0.29	+0.4
2,126,487	-		MIT1002_01919	0.31	-0.8
2,126,531	+		MIT1002_01919	0.36	+1.3
2,126,566	+		MIT1002_01919	0.40	+0.1
2,126,644	+		MIT1002_01919	0.49	+0.4
2,126,710	-		MIT1002_01919	0.56	-0.3
2,126,726	+		MIT1002_01919	0.58	+1.6
2,126,726	+		MIT1002_01919	0.58	+0.8
2,126,734	-		MIT1002_01919	0.59	-1.2
2,126,734	-		MIT1002_01919	0.59	-0.1
2,126,734	-		MIT1002_01919	0.59	-0.0
2,126,787	+		MIT1002_01919	0.65	+0.3
2,126,803	+		MIT1002_01919	0.66	+0.6
2,126,815	-		MIT1002_01919	0.68	+0.2
2,126,820	-		MIT1002_01919	0.68	-0.2
2,126,872	-		MIT1002_01919	0.74	+0.1
2,126,971	+		MIT1002_01919	0.85	+0.1
2,126,984	-		MIT1002_01919	0.86	+1.9
2,127,032	+				+0.7
2,127,091	+				+0.6
2,127,091	+				+1.0
2,127,114	+				+0.1
2,127,151	+				-0.2
2,127,151	+				+0.5
2,127,151	+				+1.5
2,127,151	+				+0.2
2,127,151	+				-0.6
2,127,151	+				-0.6
2,127,151	+				-1.9
2,127,159	-				-2.5
2,127,159	-				-0.7
2,127,159	-				-1.6
2,127,233	+				-1.4
2,127,233	+				-0.5
2,127,291	+		MIT1002_01920	0.10	+1.4
2,127,294	+		MIT1002_01920	0.11	-0.7
2,127,296	+		MIT1002_01920	0.11	-0.2
2,127,296	+		MIT1002_01920	0.11	-2.1
2,127,296	+		MIT1002_01920	0.11	-1.0
2,127,296	+		MIT1002_01920	0.11	+0.3
2,127,299	-		MIT1002_01920	0.11	-1.2
2,127,301	+		MIT1002_01920	0.11	-0.3
2,127,301	+		MIT1002_01920	0.11	-0.7
2,127,301	+		MIT1002_01920	0.11	-0.3
2,127,304	-		MIT1002_01920	0.11	-0.3
2,127,304	-		MIT1002_01920	0.11	-0.5
2,127,304	-		MIT1002_01920	0.11	-2.8
2,127,304	-		MIT1002_01920	0.11	+0.6
2,127,304	-		MIT1002_01920	0.11	-0.2
2,127,304	-		MIT1002_01920	0.11	+0.2
2,127,309	-		MIT1002_01920	0.11	+0.1
2,127,360	-		MIT1002_01920	0.14	-0.4
2,127,373	+		MIT1002_01920	0.15	+0.1
2,127,397	+		MIT1002_01920	0.17	+0.4
2,127,416	-		MIT1002_01920	0.18	-0.6
2,127,476	+		MIT1002_01920	0.21	-0.2
2,127,758	+		MIT1002_01920	0.38	-0.5
2,127,796	-		MIT1002_01920	0.41	-0.7
2,127,958	+		MIT1002_01920	0.50	-0.1
2,127,975	+		MIT1002_01920	0.51	+1.2
2,127,989	+		MIT1002_01920	0.52	+0.6
2,128,058	+		MIT1002_01920	0.56	-1.2