Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01744

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
1,936,818	-		MIT1002_01743	0.75	-0.8
1,936,931	+		MIT1002_01743	0.79	-1.3
1,936,936	+		MIT1002_01743	0.79	-3.0
1,936,985	+		MIT1002_01743	0.81	+1.3
1,937,002	+		MIT1002_01743	0.81	+0.2
1,937,014	+		MIT1002_01743	0.82	-1.8
1,937,033	+		MIT1002_01743	0.82	-0.7
1,937,033	+		MIT1002_01743	0.82	-0.8
1,937,033	+		MIT1002_01743	0.82	+0.0
1,937,033	+		MIT1002_01743	0.82	-0.2
1,937,033	+		MIT1002_01743	0.82	-2.5
1,937,033	+		MIT1002_01743	0.82	-0.9
1,937,033	+		MIT1002_01743	0.82	-1.3
1,937,033	+		MIT1002_01743	0.82	-1.2
1,937,033	+		MIT1002_01743	0.82	-0.7
1,937,033	+		MIT1002_01743	0.82	+0.1
1,937,041	-		MIT1002_01743	0.82	-1.0
1,937,041	-		MIT1002_01743	0.82	-1.3
1,937,041	-		MIT1002_01743	0.82	+2.0
1,937,041	-		MIT1002_01743	0.82	-1.2
1,937,043	+		MIT1002_01743	0.83	-1.4
1,937,043	+		MIT1002_01743	0.83	+0.8
1,937,051	-		MIT1002_01743	0.83	+1.5
1,937,056	-		MIT1002_01743	0.83	+0.8
1,937,062	+		MIT1002_01743	0.83	-0.4
1,937,062	+		MIT1002_01743	0.83	-0.7
1,937,086	+		MIT1002_01743	0.84	-1.0
1,937,086	+		MIT1002_01743	0.84	+0.3
1,937,086	+		MIT1002_01743	0.84	+2.6
1,937,086	+		MIT1002_01743	0.84	+0.4
1,937,086	+		MIT1002_01743	0.84	+0.6
1,937,094	-		MIT1002_01743	0.84	+0.0
1,937,094	-		MIT1002_01743	0.84	+0.4
1,937,094	-		MIT1002_01743	0.84	+0.1
1,937,094	-		MIT1002_01743	0.84	+0.3
1,937,094	-		MIT1002_01743	0.84	-0.9
1,937,110	+		MIT1002_01743	0.85	-1.2
1,937,110	+		MIT1002_01743	0.85	-0.7
1,937,110	+		MIT1002_01743	0.85	-0.8
1,937,110	+		MIT1002_01743	0.85	+1.4
1,937,110	+		MIT1002_01743	0.85	-0.2
1,937,118	-		MIT1002_01743	0.85	+0.5
1,937,118	-		MIT1002_01743	0.85	-1.3
1,937,118	-		MIT1002_01743	0.85	-0.9
1,937,118	-		MIT1002_01743	0.85	+0.3
1,937,118	-		MIT1002_01743	0.85	-0.7
1,937,144	+		MIT1002_01743	0.86	-2.2
1,937,158	+		MIT1002_01743	0.86	+1.2
1,937,161	+		MIT1002_01743	0.86	-2.6
1,937,166	-		MIT1002_01743	0.87	-1.0
1,937,177	+		MIT1002_01743	0.87	-0.2
1,937,192	+		MIT1002_01743	0.88	+0.5
1,937,219	-		MIT1002_01743	0.88	+1.4
1,937,221	+		MIT1002_01743	0.88	+0.6
1,937,270	+				-0.3
1,937,471	-				-1.4
1,937,524	-				-0.5
1,937,577	+				-1.6
1,937,577	+				-0.5
1,937,639	+				-1.7
1,937,659	-				+0.2
1,937,692	-				-0.1
1,937,754	-				+1.2
1,937,884	-		MIT1002_01744	0.10	+0.6
1,937,884	-		MIT1002_01744	0.10	-1.0
1,937,884	-		MIT1002_01744	0.10	-0.6
1,937,913	+		MIT1002_01744	0.12	-1.1
1,937,953	-		MIT1002_01744	0.14	+0.5
1,937,989	-		MIT1002_01744	0.16	-1.8
1,938,057	+		MIT1002_01744	0.20	-1.4
1,938,057	+		MIT1002_01744	0.20	-0.1
1,938,100	+		MIT1002_01744	0.22	+1.9
1,938,100	+		MIT1002_01744	0.22	+1.4
1,938,108	-		MIT1002_01744	0.23	+0.7
1,938,108	-		MIT1002_01744	0.23	+0.9
1,938,113	-		MIT1002_01744	0.23	+0.9
1,938,182	-		MIT1002_01744	0.27	-0.9
1,938,230	-		MIT1002_01744	0.29	+0.0
1,938,265	-		MIT1002_01744	0.31	+1.0
1,938,329	+		MIT1002_01744	0.35	-1.4
1,938,479	-		MIT1002_01744	0.43	-1.6
1,938,538	-		MIT1002_01744	0.46	+2.2
1,938,549	-		MIT1002_01744	0.47	+0.3
1,938,576	+		MIT1002_01744	0.48	+0.6
1,938,577	+		MIT1002_01744	0.49	+0.0
1,938,654	+		MIT1002_01744	0.53	+0.0
1,938,690	+		MIT1002_01744	0.55	-0.7
1,938,690	+		MIT1002_01744	0.55	-2.1
1,938,690	+		MIT1002_01744	0.55	+1.9
1,938,882	+		MIT1002_01744	0.65	+0.2
1,938,978	-		MIT1002_01744	0.71	-0.6
1,938,987	-		MIT1002_01744	0.71	+0.3
1,939,027	+		MIT1002_01744	0.73	-0.6
1,939,050	+		MIT1002_01744	0.75	-0.8
1,939,079	-		MIT1002_01744	0.76	-0.8
1,939,089	-		MIT1002_01744	0.77	-1.5
1,939,326	+		MIT1002_01744	0.90	-0.2
1,939,328	+		MIT1002_01744	0.90	+1.9
1,939,328	+		MIT1002_01744	0.90	-0.0
1,939,394	-				+0.8
1,939,394	-				-0.8
1,939,423	-				-0.2
1,939,438	+				-1.2
1,939,446	-				-0.8
1,939,446	-				+1.7
1,939,446	-				-0.5
1,939,446	-				+0.3
1,939,465	-				+0.5
1,939,492	+				-2.1
1,939,569	+				-0.4
1,939,579	+				-0.4
1,939,579	+				+0.6
1,939,579	+				-0.4
1,939,579	+				+0.0
1,939,579	+				+1.1
1,939,579	+				+0.9
1,939,579	+				-0.4
1,939,579	+				-1.8
1,939,587	-				+0.1
1,939,587	-				-0.4
1,939,587	-				-0.7
1,939,587	-				+0.1
1,939,587	-				-0.3
1,939,587	-				-0.1
1,939,587	-				-0.3
1,939,587	-				+0.9
1,939,587	-				-3.1
1,939,587	-				+1.0
1,939,650	+				+0.7
1,939,673	+				+0.4
1,939,679	-				+1.4
1,939,729	+				+1.1
1,939,742	-				+0.2
1,939,742	-				+0.3
1,939,826	-		MIT1002_01745	0.23	-0.8
1,939,835	-		MIT1002_01745	0.25	-0.6
1,939,866	+		MIT1002_01745	0.33	-0.4
1,939,869	+		MIT1002_01745	0.34	-2.5
1,939,871	+		MIT1002_01745	0.35	-2.4
1,939,889	+		MIT1002_01745	0.39	-0.3
1,939,907	+		MIT1002_01745	0.44	+0.6
1,939,907	+		MIT1002_01745	0.44	+1.2
1,939,907	+		MIT1002_01745	0.44	+0.7
1,939,907	+		MIT1002_01745	0.44	-0.1
1,939,907	+		MIT1002_01745	0.44	+0.8
1,939,945	-		MIT1002_01745	0.54	-0.6
1,939,975	+		MIT1002_01745	0.62	-0.6
1,940,010	+		MIT1002_01745	0.71	+0.0
1,940,020	+		MIT1002_01745	0.74	+0.6
1,940,065	-		MIT1002_01745	0.86	-0.6
1,940,071	+		MIT1002_01745	0.87	+0.0
1,940,101	+				-0.3
1,940,109	-				-1.7
1,940,158	+				-0.2
1,940,161	-				+1.1
1,940,161	-				-0.2
1,940,166	-				-0.0
1,940,185	-		MIT1002_01746	0.15	+1.2
1,940,255	+		MIT1002_01746	0.34	-0.9
1,940,290	-		MIT1002_01746	0.43	+0.5
1,940,300	-		MIT1002_01746	0.46	+0.7
1,940,331	+		MIT1002_01746	0.55	-0.3
1,940,339	-		MIT1002_01746	0.57	-0.5
1,940,339	-		MIT1002_01746	0.57	-0.3
1,940,385	-		MIT1002_01746	0.69	+0.5
1,940,450	-		MIT1002_01746	0.87	-0.8
1,940,460	+				+1.4