Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01204

Experiment: monoculture; Experiment C, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 3
1,326,996	+		MIT1002_01203	0.70	+1.7
1,327,002	-		MIT1002_01203	0.70	+0.7
1,327,002	-		MIT1002_01203	0.70	-0.5
1,327,026	+		MIT1002_01203	0.71	+0.8
1,327,046	-		MIT1002_01203	0.72	+0.4
1,327,059	-		MIT1002_01203	0.72	-2.6
1,327,064	-		MIT1002_01203	0.72	+0.3
1,327,070	-		MIT1002_01203	0.72	-0.6
1,327,207	-		MIT1002_01203	0.77	+0.7
1,327,207	-		MIT1002_01203	0.77	-1.3
1,327,256	+		MIT1002_01203	0.79	+1.7
1,327,340	-		MIT1002_01203	0.82	-0.7
1,327,378	+		MIT1002_01203	0.83	+2.3
1,327,414	+		MIT1002_01203	0.84	-0.8
1,327,427	+		MIT1002_01203	0.85	-0.6
1,327,439	+		MIT1002_01203	0.85	+1.3
1,327,449	+		MIT1002_01203	0.86	+0.5
1,327,468	+		MIT1002_01203	0.86	-0.4
1,327,509	+		MIT1002_01203	0.88	-0.5
1,327,517	-		MIT1002_01203	0.88	+0.7
1,327,785	-				-4.0
1,327,797	-				-0.8
1,327,797	-				-0.5
1,327,797	-				+0.7
1,327,805	+				+0.2
1,327,810	+				-0.4
1,327,906	-				+0.4
1,327,973	-				-2.0
1,327,982	-				+0.4
1,327,984	+				+0.4
1,327,984	+				-0.6
1,327,984	+				+0.9
1,327,992	-				-2.5
1,327,994	+				+0.2
1,328,019	+		MIT1002_01204	0.11	+0.3
1,328,027	-		MIT1002_01204	0.12	+0.5
1,328,157	+		MIT1002_01204	0.26	-2.9
1,328,206	+		MIT1002_01204	0.32	-0.9
1,328,234	+		MIT1002_01204	0.35	-0.7
1,328,261	-		MIT1002_01204	0.38	+0.1
1,328,273	+		MIT1002_01204	0.40	+0.8
1,328,280	-		MIT1002_01204	0.40	+1.3
1,328,324	+		MIT1002_01204	0.45	+1.2
1,328,367	+		MIT1002_01204	0.50	+0.6
1,328,456	+		MIT1002_01204	0.60	-0.2
1,328,522	+		MIT1002_01204	0.68	-0.1
1,328,665	+		MIT1002_01204	0.84	+0.6
1,328,670	+		MIT1002_01204	0.85	-0.9
1,328,706	+		MIT1002_01204	0.89	-1.9
1,328,706	+		MIT1002_01204	0.89	+0.2
1,328,706	+		MIT1002_01204	0.89	+0.9
1,328,712	-		MIT1002_01204	0.90	-1.6
1,328,713	+		MIT1002_01204	0.90	-1.0
1,328,807	-				+0.0
1,328,845	-				-0.1
1,328,845	-				+0.8
1,328,855	-				+1.2
1,328,855	-				-0.6
1,328,956	+				-0.6
1,328,988	+				-0.1
1,328,988	+				+1.6
1,328,988	+				-0.2
1,329,072	+				-0.3
1,329,107	+		MIT1002_01205	0.12	+0.6
1,329,113	-		MIT1002_01205	0.14	-1.1
1,329,117	+		MIT1002_01205	0.14	+1.9
1,329,204	+		MIT1002_01205	0.33	-0.1
1,329,241	-		MIT1002_01205	0.41	+1.0
1,329,270	-		MIT1002_01205	0.48	-0.4
1,329,321	-		MIT1002_01205	0.59	+1.3
1,329,398	+		MIT1002_01205	0.76	+0.8
1,329,406	-		MIT1002_01205	0.77	+0.2
1,329,406	-		MIT1002_01205	0.77	+1.2
1,329,460	+		MIT1002_01205	0.89	+0.4
1,329,468	+				+0.4
1,329,478	+				-0.5
1,329,539	+				+2.7
1,329,550	+				-0.1
1,329,593	-				+0.9
1,329,663	-		MIT1002_01206	0.15	-0.1
1,329,781	+		MIT1002_01206	0.26	+0.7
1,329,781	+		MIT1002_01206	0.26	-0.5
1,329,781	+		MIT1002_01206	0.26	-0.1