Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01203

Experiment: monoculture; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01202 and MIT1002_01203 are separated by 75 nucleotidesMIT1002_01203 and MIT1002_01204 are separated by 61 nucleotides MIT1002_01202: MIT1002_01202 - 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase), at 1,323,688 to 1,324,902 _01202 MIT1002_01203: MIT1002_01203 - putative diguanylate cyclase YcdT, at 1,324,978 to 1,327,863 _01203 MIT1002_01204: MIT1002_01204 - putative membrane protein, at 1,327,925 to 1,328,803 _01204 Position (kb) 1324 1325 1326 1327 1328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1323.985 kb on - strand, within MIT1002_01202at 1324.030 kb on - strand, within MIT1002_01202at 1324.043 kb on - strand, within MIT1002_01202at 1324.062 kb on + strand, within MIT1002_01202at 1324.067 kb on + strand, within MIT1002_01202at 1324.067 kb on + strand, within MIT1002_01202at 1324.067 kb on + strand, within MIT1002_01202at 1324.070 kb on - strand, within MIT1002_01202at 1324.075 kb on - strand, within MIT1002_01202at 1324.075 kb on - strand, within MIT1002_01202at 1324.164 kb on - strand, within MIT1002_01202at 1324.237 kb on + strand, within MIT1002_01202at 1324.283 kb on + strand, within MIT1002_01202at 1324.291 kb on - strand, within MIT1002_01202at 1324.293 kb on + strand, within MIT1002_01202at 1324.318 kb on - strand, within MIT1002_01202at 1324.318 kb on - strand, within MIT1002_01202at 1324.348 kb on - strand, within MIT1002_01202at 1324.365 kb on + strand, within MIT1002_01202at 1324.377 kb on + strand, within MIT1002_01202at 1324.384 kb on + strand, within MIT1002_01202at 1324.385 kb on - strand, within MIT1002_01202at 1324.392 kb on - strand, within MIT1002_01202at 1324.440 kb on - strand, within MIT1002_01202at 1324.644 kb on - strand, within MIT1002_01202at 1324.667 kb on - strand, within MIT1002_01202at 1324.690 kb on - strand, within MIT1002_01202at 1324.848 kb on - strandat 1324.855 kb on + strandat 1324.857 kb on + strandat 1324.940 kb on + strandat 1324.948 kb on - strandat 1324.983 kb on - strandat 1325.018 kb on + strandat 1325.026 kb on - strandat 1325.026 kb on - strandat 1325.144 kb on + strandat 1325.180 kb on + strandat 1325.198 kb on - strandat 1325.198 kb on - strandat 1325.205 kb on - strandat 1325.212 kb on + strandat 1325.220 kb on - strandat 1325.315 kb on + strand, within MIT1002_01203at 1325.315 kb on + strand, within MIT1002_01203at 1325.315 kb on + strand, within MIT1002_01203at 1325.315 kb on + strand, within MIT1002_01203at 1325.333 kb on - strand, within MIT1002_01203at 1325.371 kb on - strand, within MIT1002_01203at 1325.401 kb on + strand, within MIT1002_01203at 1325.401 kb on + strand, within MIT1002_01203at 1325.401 kb on - strand, within MIT1002_01203at 1325.401 kb on - strand, within MIT1002_01203at 1325.512 kb on + strand, within MIT1002_01203at 1325.695 kb on - strand, within MIT1002_01203at 1325.706 kb on - strand, within MIT1002_01203at 1325.771 kb on + strand, within MIT1002_01203at 1325.800 kb on + strand, within MIT1002_01203at 1325.809 kb on - strand, within MIT1002_01203at 1325.833 kb on + strand, within MIT1002_01203at 1325.959 kb on - strand, within MIT1002_01203at 1325.993 kb on + strand, within MIT1002_01203at 1326.082 kb on - strand, within MIT1002_01203at 1326.185 kb on - strand, within MIT1002_01203at 1326.190 kb on - strand, within MIT1002_01203at 1326.199 kb on + strand, within MIT1002_01203at 1326.207 kb on - strand, within MIT1002_01203at 1326.278 kb on + strand, within MIT1002_01203at 1326.278 kb on + strand, within MIT1002_01203at 1326.278 kb on + strand, within MIT1002_01203at 1326.284 kb on - strand, within MIT1002_01203at 1326.286 kb on - strand, within MIT1002_01203at 1326.359 kb on + strand, within MIT1002_01203at 1326.403 kb on + strand, within MIT1002_01203at 1326.410 kb on + strand, within MIT1002_01203at 1326.413 kb on + strand, within MIT1002_01203at 1326.424 kb on + strand, within MIT1002_01203at 1326.479 kb on + strand, within MIT1002_01203at 1326.532 kb on + strand, within MIT1002_01203at 1326.619 kb on - strand, within MIT1002_01203at 1326.629 kb on + strand, within MIT1002_01203at 1326.637 kb on - strand, within MIT1002_01203at 1326.641 kb on + strand, within MIT1002_01203at 1326.649 kb on - strand, within MIT1002_01203at 1326.677 kb on + strand, within MIT1002_01203at 1326.677 kb on + strand, within MIT1002_01203at 1326.677 kb on + strand, within MIT1002_01203at 1326.677 kb on + strand, within MIT1002_01203at 1326.677 kb on + strand, within MIT1002_01203at 1326.677 kb on + strand, within MIT1002_01203at 1326.677 kb on + strand, within MIT1002_01203at 1326.679 kb on + strand, within MIT1002_01203at 1326.685 kb on - strand, within MIT1002_01203at 1326.685 kb on - strand, within MIT1002_01203at 1326.685 kb on - strand, within MIT1002_01203at 1326.755 kb on - strand, within MIT1002_01203at 1326.890 kb on + strand, within MIT1002_01203at 1326.890 kb on + strand, within MIT1002_01203at 1326.890 kb on + strand, within MIT1002_01203at 1326.890 kb on + strand, within MIT1002_01203at 1326.898 kb on - strand, within MIT1002_01203at 1326.898 kb on - strand, within MIT1002_01203at 1326.898 kb on - strand, within MIT1002_01203at 1326.898 kb on - strand, within MIT1002_01203at 1326.898 kb on - strand, within MIT1002_01203at 1326.898 kb on - strand, within MIT1002_01203at 1326.898 kb on - strand, within MIT1002_01203at 1326.904 kb on + strand, within MIT1002_01203at 1326.914 kb on + strand, within MIT1002_01203at 1326.914 kb on + strand, within MIT1002_01203at 1326.914 kb on + strand, within MIT1002_01203at 1326.919 kb on + strand, within MIT1002_01203at 1326.922 kb on - strand, within MIT1002_01203at 1326.922 kb on - strand, within MIT1002_01203at 1326.996 kb on + strand, within MIT1002_01203at 1327.002 kb on - strand, within MIT1002_01203at 1327.002 kb on - strand, within MIT1002_01203at 1327.026 kb on + strand, within MIT1002_01203at 1327.046 kb on - strand, within MIT1002_01203at 1327.059 kb on - strand, within MIT1002_01203at 1327.064 kb on - strand, within MIT1002_01203at 1327.070 kb on - strand, within MIT1002_01203at 1327.207 kb on - strand, within MIT1002_01203at 1327.207 kb on - strand, within MIT1002_01203at 1327.256 kb on + strand, within MIT1002_01203at 1327.340 kb on - strand, within MIT1002_01203at 1327.378 kb on + strand, within MIT1002_01203at 1327.414 kb on + strand, within MIT1002_01203at 1327.427 kb on + strand, within MIT1002_01203at 1327.439 kb on + strand, within MIT1002_01203at 1327.449 kb on + strand, within MIT1002_01203at 1327.468 kb on + strand, within MIT1002_01203at 1327.509 kb on + strand, within MIT1002_01203at 1327.517 kb on - strand, within MIT1002_01203at 1327.785 kb on - strandat 1327.797 kb on - strandat 1327.797 kb on - strandat 1327.797 kb on - strandat 1327.805 kb on + strandat 1327.810 kb on + strandat 1327.906 kb on - strandat 1327.973 kb on - strandat 1327.982 kb on - strandat 1327.984 kb on + strandat 1327.984 kb on + strandat 1327.984 kb on + strandat 1327.992 kb on - strandat 1327.994 kb on + strandat 1328.019 kb on + strand, within MIT1002_01204at 1328.027 kb on - strand, within MIT1002_01204at 1328.157 kb on + strand, within MIT1002_01204at 1328.206 kb on + strand, within MIT1002_01204at 1328.234 kb on + strand, within MIT1002_01204at 1328.261 kb on - strand, within MIT1002_01204at 1328.273 kb on + strand, within MIT1002_01204at 1328.280 kb on - strand, within MIT1002_01204at 1328.324 kb on + strand, within MIT1002_01204at 1328.367 kb on + strand, within MIT1002_01204at 1328.456 kb on + strand, within MIT1002_01204at 1328.522 kb on + strand, within MIT1002_01204at 1328.665 kb on + strand, within MIT1002_01204at 1328.670 kb on + strand, within MIT1002_01204at 1328.706 kb on + strand, within MIT1002_01204at 1328.706 kb on + strand, within MIT1002_01204at 1328.706 kb on + strand, within MIT1002_01204at 1328.712 kb on - strand, within MIT1002_01204at 1328.713 kb on + strand, within MIT1002_01204at 1328.807 kb on - strandat 1328.845 kb on - strandat 1328.845 kb on - strandat 1328.855 kb on - strandat 1328.855 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3
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1,323,985 - MIT1002_01202 0.24 -1.0
1,324,030 - MIT1002_01202 0.28 -0.3
1,324,043 - MIT1002_01202 0.29 -0.6
1,324,062 + MIT1002_01202 0.31 +0.8
1,324,067 + MIT1002_01202 0.31 +0.2
1,324,067 + MIT1002_01202 0.31 +2.2
1,324,067 + MIT1002_01202 0.31 +1.2
1,324,070 - MIT1002_01202 0.31 +1.1
1,324,075 - MIT1002_01202 0.32 -0.3
1,324,075 - MIT1002_01202 0.32 -0.1
1,324,164 - MIT1002_01202 0.39 -0.8
1,324,237 + MIT1002_01202 0.45 +0.8
1,324,283 + MIT1002_01202 0.49 -0.1
1,324,291 - MIT1002_01202 0.50 +0.0
1,324,293 + MIT1002_01202 0.50 +0.5
1,324,318 - MIT1002_01202 0.52 -0.0
1,324,318 - MIT1002_01202 0.52 -1.0
1,324,348 - MIT1002_01202 0.54 -0.4
1,324,365 + MIT1002_01202 0.56 +0.7
1,324,377 + MIT1002_01202 0.57 +0.0
1,324,384 + MIT1002_01202 0.57 -0.6
1,324,385 - MIT1002_01202 0.57 -1.7
1,324,392 - MIT1002_01202 0.58 +1.0
1,324,440 - MIT1002_01202 0.62 +0.1
1,324,644 - MIT1002_01202 0.79 +0.7
1,324,667 - MIT1002_01202 0.81 -1.2
1,324,690 - MIT1002_01202 0.82 -0.8
1,324,848 - +1.6
1,324,855 + -0.8
1,324,857 + -0.7
1,324,940 + -0.4
1,324,948 - -0.7
1,324,983 - +0.8
1,325,018 + +2.4
1,325,026 - -0.4
1,325,026 - -0.1
1,325,144 + -0.4
1,325,180 + +0.0
1,325,198 - -0.8
1,325,198 - +0.2
1,325,205 - +0.7
1,325,212 + -0.6
1,325,220 - +0.9
1,325,315 + MIT1002_01203 0.12 -0.2
1,325,315 + MIT1002_01203 0.12 -0.4
1,325,315 + MIT1002_01203 0.12 -1.3
1,325,315 + MIT1002_01203 0.12 -1.9
1,325,333 - MIT1002_01203 0.12 -1.2
1,325,371 - MIT1002_01203 0.14 +0.2
1,325,401 + MIT1002_01203 0.15 +0.6
1,325,401 + MIT1002_01203 0.15 -0.3
1,325,401 - MIT1002_01203 0.15 -0.1
1,325,401 - MIT1002_01203 0.15 -0.8
1,325,512 + MIT1002_01203 0.19 +0.2
1,325,695 - MIT1002_01203 0.25 +0.4
1,325,706 - MIT1002_01203 0.25 +0.0
1,325,771 + MIT1002_01203 0.27 -1.1
1,325,800 + MIT1002_01203 0.28 +0.0
1,325,809 - MIT1002_01203 0.29 +0.7
1,325,833 + MIT1002_01203 0.30 -0.3
1,325,959 - MIT1002_01203 0.34 -0.3
1,325,993 + MIT1002_01203 0.35 -0.9
1,326,082 - MIT1002_01203 0.38 +0.2
1,326,185 - MIT1002_01203 0.42 -1.5
1,326,190 - MIT1002_01203 0.42 -0.2
1,326,199 + MIT1002_01203 0.42 -0.6
1,326,207 - MIT1002_01203 0.43 -1.6
1,326,278 + MIT1002_01203 0.45 -1.9
1,326,278 + MIT1002_01203 0.45 +0.5
1,326,278 + MIT1002_01203 0.45 +0.7
1,326,284 - MIT1002_01203 0.45 +0.5
1,326,286 - MIT1002_01203 0.45 -0.4
1,326,359 + MIT1002_01203 0.48 +0.0
1,326,403 + MIT1002_01203 0.49 +0.4
1,326,410 + MIT1002_01203 0.50 -0.3
1,326,413 + MIT1002_01203 0.50 +0.4
1,326,424 + MIT1002_01203 0.50 -0.2
1,326,479 + MIT1002_01203 0.52 -0.1
1,326,532 + MIT1002_01203 0.54 +0.7
1,326,619 - MIT1002_01203 0.57 -0.2
1,326,629 + MIT1002_01203 0.57 -0.0
1,326,637 - MIT1002_01203 0.57 -0.0
1,326,641 + MIT1002_01203 0.58 -0.8
1,326,649 - MIT1002_01203 0.58 +0.7
1,326,677 + MIT1002_01203 0.59 -1.8
1,326,677 + MIT1002_01203 0.59 +0.4
1,326,677 + MIT1002_01203 0.59 +0.4
1,326,677 + MIT1002_01203 0.59 +1.9
1,326,677 + MIT1002_01203 0.59 +1.2
1,326,677 + MIT1002_01203 0.59 +0.3
1,326,677 + MIT1002_01203 0.59 -0.6
1,326,679 + MIT1002_01203 0.59 -0.1
1,326,685 - MIT1002_01203 0.59 -0.7
1,326,685 - MIT1002_01203 0.59 -0.8
1,326,685 - MIT1002_01203 0.59 -0.3
1,326,755 - MIT1002_01203 0.62 -0.4
1,326,890 + MIT1002_01203 0.66 -0.4
1,326,890 + MIT1002_01203 0.66 -0.6
1,326,890 + MIT1002_01203 0.66 -0.3
1,326,890 + MIT1002_01203 0.66 -0.6
1,326,898 - MIT1002_01203 0.67 +1.0
1,326,898 - MIT1002_01203 0.67 +0.4
1,326,898 - MIT1002_01203 0.67 -1.0
1,326,898 - MIT1002_01203 0.67 +0.2
1,326,898 - MIT1002_01203 0.67 -0.3
1,326,898 - MIT1002_01203 0.67 +1.7
1,326,898 - MIT1002_01203 0.67 +0.0
1,326,904 + MIT1002_01203 0.67 -1.0
1,326,914 + MIT1002_01203 0.67 -0.4
1,326,914 + MIT1002_01203 0.67 +0.0
1,326,914 + MIT1002_01203 0.67 +0.5
1,326,919 + MIT1002_01203 0.67 +0.2
1,326,922 - MIT1002_01203 0.67 +0.1
1,326,922 - MIT1002_01203 0.67 -0.2
1,326,996 + MIT1002_01203 0.70 +1.7
1,327,002 - MIT1002_01203 0.70 +0.7
1,327,002 - MIT1002_01203 0.70 -0.5
1,327,026 + MIT1002_01203 0.71 +0.8
1,327,046 - MIT1002_01203 0.72 +0.4
1,327,059 - MIT1002_01203 0.72 -2.6
1,327,064 - MIT1002_01203 0.72 +0.3
1,327,070 - MIT1002_01203 0.72 -0.6
1,327,207 - MIT1002_01203 0.77 +0.7
1,327,207 - MIT1002_01203 0.77 -1.3
1,327,256 + MIT1002_01203 0.79 +1.7
1,327,340 - MIT1002_01203 0.82 -0.7
1,327,378 + MIT1002_01203 0.83 +2.3
1,327,414 + MIT1002_01203 0.84 -0.8
1,327,427 + MIT1002_01203 0.85 -0.6
1,327,439 + MIT1002_01203 0.85 +1.3
1,327,449 + MIT1002_01203 0.86 +0.5
1,327,468 + MIT1002_01203 0.86 -0.4
1,327,509 + MIT1002_01203 0.88 -0.5
1,327,517 - MIT1002_01203 0.88 +0.7
1,327,785 - -4.0
1,327,797 - -0.8
1,327,797 - -0.5
1,327,797 - +0.7
1,327,805 + +0.2
1,327,810 + -0.4
1,327,906 - +0.4
1,327,973 - -2.0
1,327,982 - +0.4
1,327,984 + +0.4
1,327,984 + -0.6
1,327,984 + +0.9
1,327,992 - -2.5
1,327,994 + +0.2
1,328,019 + MIT1002_01204 0.11 +0.3
1,328,027 - MIT1002_01204 0.12 +0.5
1,328,157 + MIT1002_01204 0.26 -2.9
1,328,206 + MIT1002_01204 0.32 -0.9
1,328,234 + MIT1002_01204 0.35 -0.7
1,328,261 - MIT1002_01204 0.38 +0.1
1,328,273 + MIT1002_01204 0.40 +0.8
1,328,280 - MIT1002_01204 0.40 +1.3
1,328,324 + MIT1002_01204 0.45 +1.2
1,328,367 + MIT1002_01204 0.50 +0.6
1,328,456 + MIT1002_01204 0.60 -0.2
1,328,522 + MIT1002_01204 0.68 -0.1
1,328,665 + MIT1002_01204 0.84 +0.6
1,328,670 + MIT1002_01204 0.85 -0.9
1,328,706 + MIT1002_01204 0.89 -1.9
1,328,706 + MIT1002_01204 0.89 +0.2
1,328,706 + MIT1002_01204 0.89 +0.9
1,328,712 - MIT1002_01204 0.90 -1.6
1,328,713 + MIT1002_01204 0.90 -1.0
1,328,807 - +0.0
1,328,845 - -0.1
1,328,845 - +0.8
1,328,855 - +1.2
1,328,855 - -0.6

Or see this region's nucleotide sequence