Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01083

Experiment: monoculture; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01082 and MIT1002_01083 are separated by 16 nucleotidesMIT1002_01083 and MIT1002_01084 are separated by 241 nucleotidesMIT1002_01084 and MIT1002_01085 are separated by 12 nucleotides MIT1002_01082: MIT1002_01082 - Sporulation kinase A, at 1,189,594 to 1,190,736 _01082 MIT1002_01083: MIT1002_01083 - Transcriptional regulatory protein ZraR, at 1,190,753 to 1,192,090 _01083 MIT1002_01084: MIT1002_01084 - Flagellar hook-basal body complex protein FliE, at 1,192,332 to 1,192,667 _01084 MIT1002_01085: MIT1002_01085 - Flagellar M-ring protein, at 1,192,680 to 1,194,374 _01085 Position (kb) 1190 1191 1192 1193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1189.756 kb on - strand, within MIT1002_01082at 1189.873 kb on - strand, within MIT1002_01082at 1189.873 kb on - strand, within MIT1002_01082at 1189.880 kb on + strand, within MIT1002_01082at 1189.888 kb on - strand, within MIT1002_01082at 1189.888 kb on - strand, within MIT1002_01082at 1189.888 kb on - strand, within MIT1002_01082at 1189.888 kb on - strand, within MIT1002_01082at 1189.888 kb on - strand, within MIT1002_01082at 1189.888 kb on - strand, within MIT1002_01082at 1189.895 kb on - strand, within MIT1002_01082at 1190.030 kb on + strand, within MIT1002_01082at 1190.038 kb on - strand, within MIT1002_01082at 1190.038 kb on - strand, within MIT1002_01082at 1190.107 kb on + strand, within MIT1002_01082at 1190.107 kb on + strand, within MIT1002_01082at 1190.115 kb on - strand, within MIT1002_01082at 1190.189 kb on + strand, within MIT1002_01082at 1190.197 kb on - strand, within MIT1002_01082at 1190.197 kb on - strand, within MIT1002_01082at 1190.211 kb on + strand, within MIT1002_01082at 1190.226 kb on + strand, within MIT1002_01082at 1190.305 kb on + strand, within MIT1002_01082at 1190.381 kb on + strand, within MIT1002_01082at 1190.475 kb on - strand, within MIT1002_01082at 1190.584 kb on + strand, within MIT1002_01082at 1190.584 kb on + strand, within MIT1002_01082at 1190.585 kb on + strand, within MIT1002_01082at 1190.591 kb on + strand, within MIT1002_01082at 1190.599 kb on - strand, within MIT1002_01082at 1190.601 kb on + strand, within MIT1002_01082at 1190.601 kb on + strand, within MIT1002_01082at 1190.601 kb on + strand, within MIT1002_01082at 1190.629 kb on + strandat 1190.687 kb on - strandat 1190.709 kb on - strandat 1190.725 kb on - strandat 1190.736 kb on + strandat 1190.736 kb on + strandat 1190.736 kb on + strandat 1190.736 kb on + strandat 1190.736 kb on + strandat 1190.736 kb on + strandat 1190.736 kb on + strandat 1190.744 kb on - strandat 1190.744 kb on - strandat 1190.744 kb on - strandat 1190.792 kb on + strandat 1190.800 kb on - strandat 1190.800 kb on - strandat 1190.800 kb on - strandat 1190.807 kb on + strandat 1190.807 kb on + strandat 1190.807 kb on + strandat 1190.815 kb on - strandat 1190.861 kb on + strandat 1190.937 kb on + strand, within MIT1002_01083at 1190.945 kb on - strand, within MIT1002_01083at 1190.945 kb on - strand, within MIT1002_01083at 1190.947 kb on + strand, within MIT1002_01083at 1190.997 kb on - strand, within MIT1002_01083at 1190.999 kb on + strand, within MIT1002_01083at 1191.017 kb on - strand, within MIT1002_01083at 1191.042 kb on + strand, within MIT1002_01083at 1191.176 kb on - strand, within MIT1002_01083at 1191.244 kb on - strand, within MIT1002_01083at 1191.290 kb on - strand, within MIT1002_01083at 1191.365 kb on + strand, within MIT1002_01083at 1191.370 kb on + strand, within MIT1002_01083at 1191.380 kb on + strand, within MIT1002_01083at 1191.383 kb on - strand, within MIT1002_01083at 1191.410 kb on + strand, within MIT1002_01083at 1191.410 kb on + strand, within MIT1002_01083at 1191.418 kb on - strand, within MIT1002_01083at 1191.605 kb on + strand, within MIT1002_01083at 1191.626 kb on - strand, within MIT1002_01083at 1191.714 kb on - strand, within MIT1002_01083at 1191.719 kb on + strand, within MIT1002_01083at 1191.749 kb on - strand, within MIT1002_01083at 1191.897 kb on - strand, within MIT1002_01083at 1191.897 kb on - strand, within MIT1002_01083at 1191.924 kb on + strand, within MIT1002_01083at 1191.938 kb on - strand, within MIT1002_01083at 1191.938 kb on - strand, within MIT1002_01083at 1191.938 kb on - strand, within MIT1002_01083at 1191.948 kb on - strand, within MIT1002_01083at 1191.953 kb on - strand, within MIT1002_01083at 1191.972 kb on + strandat 1191.994 kb on + strandat 1192.002 kb on - strandat 1192.071 kb on + strandat 1192.079 kb on - strandat 1192.095 kb on + strandat 1192.271 kb on + strandat 1192.292 kb on - strandat 1192.292 kb on - strandat 1192.300 kb on - strandat 1192.326 kb on - strandat 1192.345 kb on - strandat 1192.350 kb on + strandat 1192.431 kb on + strand, within MIT1002_01084at 1192.553 kb on - strand, within MIT1002_01084at 1192.553 kb on - strand, within MIT1002_01084at 1192.565 kb on - strand, within MIT1002_01084at 1192.569 kb on - strand, within MIT1002_01084at 1192.614 kb on - strand, within MIT1002_01084at 1192.695 kb on + strandat 1192.696 kb on + strandat 1192.704 kb on - strandat 1192.711 kb on - strandat 1192.721 kb on + strandat 1192.729 kb on - strandat 1192.771 kb on + strandat 1192.771 kb on + strandat 1192.771 kb on + strandat 1192.798 kb on + strandat 1192.900 kb on + strand, within MIT1002_01085at 1192.900 kb on + strand, within MIT1002_01085at 1192.955 kb on + strand, within MIT1002_01085at 1192.969 kb on - strand, within MIT1002_01085

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3
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1,189,756 - MIT1002_01082 0.14 +3.0
1,189,873 - MIT1002_01082 0.24 -0.4
1,189,873 - MIT1002_01082 0.24 +1.0
1,189,880 + MIT1002_01082 0.25 +0.4
1,189,888 - MIT1002_01082 0.26 -2.3
1,189,888 - MIT1002_01082 0.26 +1.2
1,189,888 - MIT1002_01082 0.26 -1.1
1,189,888 - MIT1002_01082 0.26 +0.0
1,189,888 - MIT1002_01082 0.26 +1.5
1,189,888 - MIT1002_01082 0.26 +1.8
1,189,895 - MIT1002_01082 0.26 -1.3
1,190,030 + MIT1002_01082 0.38 +0.5
1,190,038 - MIT1002_01082 0.39 +2.2
1,190,038 - MIT1002_01082 0.39 +0.0
1,190,107 + MIT1002_01082 0.45 +0.8
1,190,107 + MIT1002_01082 0.45 -0.2
1,190,115 - MIT1002_01082 0.46 +1.5
1,190,189 + MIT1002_01082 0.52 -1.3
1,190,197 - MIT1002_01082 0.53 -0.7
1,190,197 - MIT1002_01082 0.53 +0.6
1,190,211 + MIT1002_01082 0.54 -0.5
1,190,226 + MIT1002_01082 0.55 +0.6
1,190,305 + MIT1002_01082 0.62 -0.7
1,190,381 + MIT1002_01082 0.69 +0.9
1,190,475 - MIT1002_01082 0.77 +0.3
1,190,584 + MIT1002_01082 0.87 +0.6
1,190,584 + MIT1002_01082 0.87 -1.3
1,190,585 + MIT1002_01082 0.87 -0.5
1,190,591 + MIT1002_01082 0.87 +1.0
1,190,599 - MIT1002_01082 0.88 -0.8
1,190,601 + MIT1002_01082 0.88 -0.4
1,190,601 + MIT1002_01082 0.88 -0.1
1,190,601 + MIT1002_01082 0.88 -1.0
1,190,629 + +1.9
1,190,687 - +2.4
1,190,709 - +0.3
1,190,725 - +0.6
1,190,736 + -0.9
1,190,736 + +0.8
1,190,736 + +0.9
1,190,736 + +0.1
1,190,736 + -0.0
1,190,736 + -1.4
1,190,736 + -2.5
1,190,744 - -1.1
1,190,744 - +0.7
1,190,744 - -1.0
1,190,792 + -0.5
1,190,800 - +0.2
1,190,800 - +1.4
1,190,800 - -0.3
1,190,807 + +0.5
1,190,807 + +0.8
1,190,807 + +0.5
1,190,815 - -1.2
1,190,861 + +0.8
1,190,937 + MIT1002_01083 0.14 -1.7
1,190,945 - MIT1002_01083 0.14 -1.3
1,190,945 - MIT1002_01083 0.14 +0.8
1,190,947 + MIT1002_01083 0.14 +1.3
1,190,997 - MIT1002_01083 0.18 +1.5
1,190,999 + MIT1002_01083 0.18 +0.0
1,191,017 - MIT1002_01083 0.20 +0.5
1,191,042 + MIT1002_01083 0.22 +0.5
1,191,176 - MIT1002_01083 0.32 +0.5
1,191,244 - MIT1002_01083 0.37 -0.1
1,191,290 - MIT1002_01083 0.40 +0.2
1,191,365 + MIT1002_01083 0.46 +0.9
1,191,370 + MIT1002_01083 0.46 -0.9
1,191,380 + MIT1002_01083 0.47 +0.0
1,191,383 - MIT1002_01083 0.47 -1.0
1,191,410 + MIT1002_01083 0.49 +1.2
1,191,410 + MIT1002_01083 0.49 +0.5
1,191,418 - MIT1002_01083 0.50 +0.9
1,191,605 + MIT1002_01083 0.64 +0.2
1,191,626 - MIT1002_01083 0.65 +0.3
1,191,714 - MIT1002_01083 0.72 +0.1
1,191,719 + MIT1002_01083 0.72 -0.7
1,191,749 - MIT1002_01083 0.74 -1.3
1,191,897 - MIT1002_01083 0.86 -1.3
1,191,897 - MIT1002_01083 0.86 +1.9
1,191,924 + MIT1002_01083 0.88 -0.2
1,191,938 - MIT1002_01083 0.89 -0.0
1,191,938 - MIT1002_01083 0.89 +0.0
1,191,938 - MIT1002_01083 0.89 +1.4
1,191,948 - MIT1002_01083 0.89 -2.0
1,191,953 - MIT1002_01083 0.90 +0.9
1,191,972 + +0.5
1,191,994 + +0.4
1,192,002 - +0.4
1,192,071 + -0.3
1,192,079 - +1.0
1,192,095 + +1.0
1,192,271 + +0.9
1,192,292 - +1.1
1,192,292 - -1.0
1,192,300 - +0.1
1,192,326 - +0.1
1,192,345 - +1.8
1,192,350 + -0.4
1,192,431 + MIT1002_01084 0.29 -0.8
1,192,553 - MIT1002_01084 0.66 -0.5
1,192,553 - MIT1002_01084 0.66 -1.7
1,192,565 - MIT1002_01084 0.69 -1.0
1,192,569 - MIT1002_01084 0.71 -3.3
1,192,614 - MIT1002_01084 0.84 -0.2
1,192,695 + +0.0
1,192,696 + -0.4
1,192,704 - -1.9
1,192,711 - -2.3
1,192,721 + -1.1
1,192,729 - -1.6
1,192,771 + +0.1
1,192,771 + -0.4
1,192,771 + +1.4
1,192,798 + +0.4
1,192,900 + MIT1002_01085 0.13 -0.1
1,192,900 + MIT1002_01085 0.13 -0.7
1,192,955 + MIT1002_01085 0.16 -0.9
1,192,969 - MIT1002_01085 0.17 -0.3

Or see this region's nucleotide sequence