Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00890 and MIT1002_00891 are separated by 320 nucleotides MIT1002_00891 and MIT1002_00892 are separated by 93 nucleotides
MIT1002_00890: MIT1002_00890 - Aminopeptidase N, at 979,775 to 981,706
_00890
MIT1002_00891: MIT1002_00891 - peroxiredoxin, at 982,027 to 982,563
_00891
MIT1002_00892: MIT1002_00892 - Transposase IS116/IS110/IS902 family protein, at 982,657 to 983,682
_00892
Position (kb) 982
983 Strain fitness (log2 ratio) -1
0
1
2 at 981.123 kb on + strand, within MIT1002_00890 at 981.131 kb on - strand, within MIT1002_00890 at 981.276 kb on - strand, within MIT1002_00890 at 981.300 kb on - strand, within MIT1002_00890 at 981.323 kb on - strand, within MIT1002_00890 at 981.349 kb on + strand, within MIT1002_00890 at 981.357 kb on - strand, within MIT1002_00890 at 981.369 kb on + strand, within MIT1002_00890 at 981.369 kb on - strand, within MIT1002_00890 at 981.371 kb on + strand, within MIT1002_00890 at 981.371 kb on + strand, within MIT1002_00890 at 981.371 kb on + strand, within MIT1002_00890 at 981.377 kb on - strand, within MIT1002_00890 at 981.379 kb on - strand, within MIT1002_00890 at 981.379 kb on - strand, within MIT1002_00890 at 981.379 kb on - strand, within MIT1002_00890 at 981.410 kb on + strand, within MIT1002_00890 at 981.410 kb on + strand, within MIT1002_00890 at 981.434 kb on + strand, within MIT1002_00890 at 981.609 kb on + strand at 981.677 kb on + strand at 981.701 kb on + strand at 981.783 kb on - strand at 981.824 kb on + strand at 981.829 kb on - strand at 981.921 kb on + strand at 981.969 kb on - strand at 982.008 kb on - strand at 982.090 kb on + strand, within MIT1002_00891 at 982.218 kb on - strand, within MIT1002_00891 at 982.257 kb on + strand, within MIT1002_00891 at 982.264 kb on + strand, within MIT1002_00891 at 982.267 kb on - strand, within MIT1002_00891 at 982.272 kb on - strand, within MIT1002_00891 at 982.282 kb on + strand, within MIT1002_00891 at 982.366 kb on - strand, within MIT1002_00891 at 982.488 kb on - strand, within MIT1002_00891 at 982.509 kb on - strand, within MIT1002_00891 at 982.533 kb on - strand at 982.550 kb on + strand at 982.566 kb on - strand at 982.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 981,123 + MIT1002_00890 0.70 +0.7 981,131 - MIT1002_00890 0.70 -1.1 981,276 - MIT1002_00890 0.78 -0.3 981,300 - MIT1002_00890 0.79 -0.1 981,323 - MIT1002_00890 0.80 -1.1 981,349 + MIT1002_00890 0.81 +2.3 981,357 - MIT1002_00890 0.82 -0.5 981,369 + MIT1002_00890 0.83 +0.8 981,369 - MIT1002_00890 0.83 +0.4 981,371 + MIT1002_00890 0.83 +1.6 981,371 + MIT1002_00890 0.83 +0.3 981,371 + MIT1002_00890 0.83 -0.5 981,377 - MIT1002_00890 0.83 -0.1 981,379 - MIT1002_00890 0.83 -1.4 981,379 - MIT1002_00890 0.83 -0.3 981,379 - MIT1002_00890 0.83 +0.4 981,410 + MIT1002_00890 0.85 -0.2 981,410 + MIT1002_00890 0.85 -0.7 981,434 + MIT1002_00890 0.86 -0.3 981,609 + -0.5 981,677 + -0.4 981,701 + +1.2 981,783 - +2.0 981,824 + +0.7 981,829 - -1.6 981,921 + +1.3 981,969 - -0.3 982,008 - +0.9 982,090 + MIT1002_00891 0.12 +0.9 982,218 - MIT1002_00891 0.36 -0.1 982,257 + MIT1002_00891 0.43 -0.3 982,264 + MIT1002_00891 0.44 -0.4 982,267 - MIT1002_00891 0.45 +0.4 982,272 - MIT1002_00891 0.46 +1.0 982,282 + MIT1002_00891 0.47 -0.3 982,366 - MIT1002_00891 0.63 +0.0 982,488 - MIT1002_00891 0.86 +1.0 982,509 - MIT1002_00891 0.90 +1.0 982,533 - -1.0 982,550 + -1.0 982,566 - +1.9 982,588 - +0.2
Or see this region's nucleotide sequence