Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00853 and MIT1002_00854 are separated by 334 nucleotides MIT1002_00854 and MIT1002_00855 are separated by 19 nucleotides MIT1002_00855 and MIT1002_00856 are separated by 23 nucleotides
MIT1002_00853: MIT1002_00853 - hypothetical protein, at 933,603 to 936,077
_00853
MIT1002_00854: MIT1002_00854 - aromatic amino acid exporter, at 936,412 to 937,344
_00854
MIT1002_00855: MIT1002_00855 - lysine-arginine-ornithine-binding periplasmic protein, at 937,364 to 938,128
_00855
MIT1002_00856: MIT1002_00856 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 938,152 to 941,031
_00856
Position (kb) 936
937
938 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 935.412 kb on - strand, within MIT1002_00853 at 935.412 kb on - strand, within MIT1002_00853 at 935.412 kb on - strand, within MIT1002_00853 at 935.412 kb on - strand, within MIT1002_00853 at 935.452 kb on + strand, within MIT1002_00853 at 935.522 kb on + strand, within MIT1002_00853 at 935.561 kb on - strand, within MIT1002_00853 at 935.585 kb on - strand, within MIT1002_00853 at 935.638 kb on + strand, within MIT1002_00853 at 935.641 kb on - strand, within MIT1002_00853 at 935.667 kb on + strand, within MIT1002_00853 at 935.687 kb on + strand, within MIT1002_00853 at 935.708 kb on - strand, within MIT1002_00853 at 935.720 kb on - strand, within MIT1002_00853 at 935.720 kb on - strand, within MIT1002_00853 at 935.731 kb on - strand, within MIT1002_00853 at 935.768 kb on + strand, within MIT1002_00853 at 935.864 kb on - strand at 935.879 kb on + strand at 935.910 kb on + strand at 935.918 kb on + strand at 935.918 kb on - strand at 935.937 kb on - strand at 935.937 kb on - strand at 935.996 kb on + strand at 936.111 kb on + strand at 936.111 kb on + strand at 936.119 kb on - strand at 936.119 kb on - strand at 936.119 kb on - strand at 936.119 kb on - strand at 936.241 kb on - strand at 936.241 kb on - strand at 936.248 kb on + strand at 936.251 kb on - strand at 936.311 kb on - strand at 936.311 kb on - strand at 936.355 kb on + strand at 936.355 kb on + strand at 936.365 kb on + strand at 936.373 kb on - strand at 936.373 kb on - strand at 936.392 kb on + strand at 936.473 kb on + strand at 936.540 kb on + strand, within MIT1002_00854 at 936.540 kb on + strand, within MIT1002_00854 at 936.548 kb on - strand, within MIT1002_00854 at 936.548 kb on - strand, within MIT1002_00854 at 936.548 kb on - strand, within MIT1002_00854 at 936.549 kb on - strand, within MIT1002_00854 at 936.549 kb on - strand, within MIT1002_00854 at 936.559 kb on - strand, within MIT1002_00854 at 936.559 kb on - strand, within MIT1002_00854 at 936.559 kb on - strand, within MIT1002_00854 at 936.583 kb on + strand, within MIT1002_00854 at 936.616 kb on + strand, within MIT1002_00854 at 936.616 kb on + strand, within MIT1002_00854 at 936.616 kb on + strand, within MIT1002_00854 at 936.623 kb on + strand, within MIT1002_00854 at 936.624 kb on - strand, within MIT1002_00854 at 936.664 kb on + strand, within MIT1002_00854 at 936.697 kb on + strand, within MIT1002_00854 at 936.705 kb on - strand, within MIT1002_00854 at 936.705 kb on - strand, within MIT1002_00854 at 936.712 kb on - strand, within MIT1002_00854 at 936.738 kb on - strand, within MIT1002_00854 at 936.738 kb on - strand, within MIT1002_00854 at 936.901 kb on - strand, within MIT1002_00854 at 936.931 kb on + strand, within MIT1002_00854 at 936.931 kb on + strand, within MIT1002_00854 at 936.931 kb on + strand, within MIT1002_00854 at 936.944 kb on - strand, within MIT1002_00854 at 937.015 kb on - strand, within MIT1002_00854 at 937.021 kb on - strand, within MIT1002_00854 at 937.091 kb on + strand, within MIT1002_00854 at 937.097 kb on - strand, within MIT1002_00854 at 937.150 kb on + strand, within MIT1002_00854 at 937.269 kb on - strand at 937.279 kb on - strand at 937.279 kb on - strand at 937.279 kb on - strand at 937.287 kb on - strand at 937.339 kb on + strand at 937.363 kb on - strand at 937.459 kb on - strand, within MIT1002_00855 at 937.569 kb on + strand, within MIT1002_00855 at 937.587 kb on - strand, within MIT1002_00855 at 937.601 kb on + strand, within MIT1002_00855 at 937.608 kb on - strand, within MIT1002_00855 at 937.608 kb on - strand, within MIT1002_00855 at 937.614 kb on - strand, within MIT1002_00855 at 937.619 kb on - strand, within MIT1002_00855 at 937.689 kb on - strand, within MIT1002_00855 at 937.717 kb on + strand, within MIT1002_00855 at 937.773 kb on - strand, within MIT1002_00855 at 937.827 kb on - strand, within MIT1002_00855 at 937.876 kb on + strand, within MIT1002_00855 at 937.884 kb on - strand, within MIT1002_00855 at 937.884 kb on - strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 938.099 kb on + strand at 938.197 kb on + strand at 938.205 kb on - strand at 938.225 kb on - strand at 938.234 kb on + strand at 938.267 kb on + strand at 938.285 kb on - strand at 938.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 935,412 - MIT1002_00853 0.73 +0.7 935,412 - MIT1002_00853 0.73 +0.0 935,412 - MIT1002_00853 0.73 -0.0 935,412 - MIT1002_00853 0.73 +3.0 935,452 + MIT1002_00853 0.75 +0.1 935,522 + MIT1002_00853 0.78 -0.9 935,561 - MIT1002_00853 0.79 +1.6 935,585 - MIT1002_00853 0.80 +0.0 935,638 + MIT1002_00853 0.82 -0.2 935,641 - MIT1002_00853 0.82 +0.6 935,667 + MIT1002_00853 0.83 -0.7 935,687 + MIT1002_00853 0.84 -0.2 935,708 - MIT1002_00853 0.85 -0.6 935,720 - MIT1002_00853 0.86 +1.3 935,720 - MIT1002_00853 0.86 -1.6 935,731 - MIT1002_00853 0.86 +1.1 935,768 + MIT1002_00853 0.87 +0.1 935,864 - +0.8 935,879 + +0.1 935,910 + +0.3 935,918 + -0.9 935,918 - -1.0 935,937 - -0.3 935,937 - +2.8 935,996 + -1.1 936,111 + -0.6 936,111 + +3.1 936,119 - +0.5 936,119 - -0.7 936,119 - +0.1 936,119 - +0.6 936,241 - +1.2 936,241 - +0.0 936,248 + +0.6 936,251 - +1.2 936,311 - +2.1 936,311 - +0.3 936,355 + +1.7 936,355 + +2.2 936,365 + -0.5 936,373 - +0.1 936,373 - +3.2 936,392 + +0.4 936,473 + -0.2 936,540 + MIT1002_00854 0.14 +0.3 936,540 + MIT1002_00854 0.14 +2.1 936,548 - MIT1002_00854 0.15 +1.4 936,548 - MIT1002_00854 0.15 -1.0 936,548 - MIT1002_00854 0.15 +0.8 936,549 - MIT1002_00854 0.15 +1.4 936,549 - MIT1002_00854 0.15 +0.4 936,559 - MIT1002_00854 0.16 -0.8 936,559 - MIT1002_00854 0.16 -0.2 936,559 - MIT1002_00854 0.16 +0.1 936,583 + MIT1002_00854 0.18 -1.2 936,616 + MIT1002_00854 0.22 +0.6 936,616 + MIT1002_00854 0.22 +0.1 936,616 + MIT1002_00854 0.22 +0.7 936,623 + MIT1002_00854 0.23 +0.2 936,624 - MIT1002_00854 0.23 +0.7 936,664 + MIT1002_00854 0.27 -0.4 936,697 + MIT1002_00854 0.31 +1.0 936,705 - MIT1002_00854 0.31 +0.7 936,705 - MIT1002_00854 0.31 -0.6 936,712 - MIT1002_00854 0.32 -0.2 936,738 - MIT1002_00854 0.35 +0.5 936,738 - MIT1002_00854 0.35 +0.7 936,901 - MIT1002_00854 0.52 +0.8 936,931 + MIT1002_00854 0.56 -1.3 936,931 + MIT1002_00854 0.56 +0.2 936,931 + MIT1002_00854 0.56 -0.5 936,944 - MIT1002_00854 0.57 +0.7 937,015 - MIT1002_00854 0.65 +0.1 937,021 - MIT1002_00854 0.65 -0.3 937,091 + MIT1002_00854 0.73 -1.0 937,097 - MIT1002_00854 0.73 -2.5 937,150 + MIT1002_00854 0.79 +2.8 937,269 - +1.2 937,279 - -0.8 937,279 - -1.6 937,279 - +0.1 937,287 - -1.9 937,339 + -1.3 937,363 - +0.5 937,459 - MIT1002_00855 0.12 +0.3 937,569 + MIT1002_00855 0.27 -0.1 937,587 - MIT1002_00855 0.29 +0.2 937,601 + MIT1002_00855 0.31 +0.6 937,608 - MIT1002_00855 0.32 -0.4 937,608 - MIT1002_00855 0.32 -0.6 937,614 - MIT1002_00855 0.33 -1.2 937,619 - MIT1002_00855 0.33 -1.4 937,689 - MIT1002_00855 0.42 +0.4 937,717 + MIT1002_00855 0.46 -0.7 937,773 - MIT1002_00855 0.53 -0.6 937,827 - MIT1002_00855 0.61 +0.5 937,876 + MIT1002_00855 0.67 +0.4 937,884 - MIT1002_00855 0.68 -0.2 937,884 - MIT1002_00855 0.68 +0.5 937,987 + MIT1002_00855 0.81 -0.4 937,987 + MIT1002_00855 0.81 +2.2 937,987 + MIT1002_00855 0.81 +1.5 937,987 + MIT1002_00855 0.81 -0.9 937,987 + MIT1002_00855 0.81 +0.4 937,987 + MIT1002_00855 0.81 +1.4 937,987 + MIT1002_00855 0.81 +0.5 937,995 - MIT1002_00855 0.82 +1.4 937,995 - MIT1002_00855 0.82 -0.8 937,995 - MIT1002_00855 0.82 +0.9 937,995 - MIT1002_00855 0.82 +1.2 937,995 - MIT1002_00855 0.82 +0.7 937,995 - MIT1002_00855 0.82 +0.9 937,995 - MIT1002_00855 0.82 +0.1 937,995 - MIT1002_00855 0.82 +0.0 937,995 - MIT1002_00855 0.82 +2.7 937,995 - MIT1002_00855 0.82 +0.2 937,995 - MIT1002_00855 0.82 +2.6 937,995 - MIT1002_00855 0.82 -0.5 937,995 - MIT1002_00855 0.82 +2.6 937,995 - MIT1002_00855 0.82 -1.5 937,995 - MIT1002_00855 0.82 -0.0 937,995 - MIT1002_00855 0.82 +0.4 938,099 + +0.4 938,197 + +0.3 938,205 - -0.8 938,225 - +0.7 938,234 + -1.1 938,267 + +0.5 938,285 - +1.9 938,344 - -0.5
Or see this region's nucleotide sequence