Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00702

Experiment: monoculture; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00700 and MIT1002_00701 are separated by 12 nucleotidesMIT1002_00701 and MIT1002_00702 overlap by 17 nucleotidesMIT1002_00702 and MIT1002_00703 are separated by 145 nucleotidesMIT1002_00703 and MIT1002_00704 overlap by 62 nucleotides MIT1002_00700: MIT1002_00700 - Nitrate reductase, at 765,944 to 768,853 _00700 MIT1002_00701: MIT1002_00701 - Siroheme synthase, at 768,866 to 769,849 _00701 MIT1002_00702: MIT1002_00702 - Anthranilate phosphoribosyltransferase, at 769,833 to 770,819 _00702 MIT1002_00703: MIT1002_00703 - hypothetical protein, at 770,965 to 771,612 _00703 MIT1002_00704: MIT1002_00704 - hypothetical protein, at 771,551 to 771,889 _00704 Position (kb) 769 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 768.864 kb on - strandat 768.975 kb on - strand, within MIT1002_00701at 768.989 kb on - strand, within MIT1002_00701at 768.989 kb on - strand, within MIT1002_00701at 769.087 kb on + strand, within MIT1002_00701at 769.093 kb on - strand, within MIT1002_00701at 769.154 kb on - strand, within MIT1002_00701at 769.186 kb on + strand, within MIT1002_00701at 769.223 kb on - strand, within MIT1002_00701at 769.263 kb on + strand, within MIT1002_00701at 769.264 kb on - strand, within MIT1002_00701at 769.271 kb on - strand, within MIT1002_00701at 769.423 kb on - strand, within MIT1002_00701at 769.479 kb on + strand, within MIT1002_00701at 769.497 kb on + strand, within MIT1002_00701at 769.590 kb on - strand, within MIT1002_00701at 769.615 kb on + strand, within MIT1002_00701at 769.640 kb on + strand, within MIT1002_00701at 769.640 kb on + strand, within MIT1002_00701at 769.640 kb on + strand, within MIT1002_00701at 769.648 kb on - strand, within MIT1002_00701at 769.691 kb on - strand, within MIT1002_00701at 769.732 kb on + strand, within MIT1002_00701at 769.801 kb on + strandat 769.801 kb on + strandat 769.807 kb on - strandat 769.809 kb on - strandat 769.888 kb on + strandat 769.888 kb on + strandat 769.894 kb on + strandat 769.945 kb on - strand, within MIT1002_00702at 769.971 kb on + strand, within MIT1002_00702at 770.002 kb on + strand, within MIT1002_00702at 770.040 kb on - strand, within MIT1002_00702at 770.057 kb on + strand, within MIT1002_00702at 770.077 kb on + strand, within MIT1002_00702at 770.212 kb on - strand, within MIT1002_00702at 770.220 kb on + strand, within MIT1002_00702at 770.220 kb on + strand, within MIT1002_00702at 770.220 kb on + strand, within MIT1002_00702at 770.222 kb on - strand, within MIT1002_00702at 770.223 kb on - strand, within MIT1002_00702at 770.238 kb on - strand, within MIT1002_00702at 770.247 kb on - strand, within MIT1002_00702at 770.254 kb on + strand, within MIT1002_00702at 770.262 kb on - strand, within MIT1002_00702at 770.262 kb on - strand, within MIT1002_00702at 770.292 kb on - strand, within MIT1002_00702at 770.366 kb on + strand, within MIT1002_00702at 770.376 kb on + strand, within MIT1002_00702at 770.384 kb on - strand, within MIT1002_00702at 770.389 kb on - strand, within MIT1002_00702at 770.396 kb on - strand, within MIT1002_00702at 770.531 kb on + strand, within MIT1002_00702at 770.598 kb on - strand, within MIT1002_00702at 770.655 kb on + strand, within MIT1002_00702at 770.694 kb on + strand, within MIT1002_00702at 770.694 kb on + strand, within MIT1002_00702at 770.703 kb on + strand, within MIT1002_00702at 770.725 kb on + strandat 770.780 kb on + strandat 770.788 kb on - strandat 770.917 kb on - strandat 771.022 kb on + strandat 771.029 kb on - strandat 771.029 kb on - strandat 771.060 kb on - strand, within MIT1002_00703at 771.079 kb on - strand, within MIT1002_00703at 771.112 kb on + strand, within MIT1002_00703at 771.141 kb on - strand, within MIT1002_00703at 771.219 kb on + strand, within MIT1002_00703at 771.222 kb on - strand, within MIT1002_00703at 771.227 kb on - strand, within MIT1002_00703at 771.264 kb on + strand, within MIT1002_00703at 771.376 kb on - strand, within MIT1002_00703at 771.583 kb on + strandat 771.583 kb on + strandat 771.588 kb on + strandat 771.596 kb on - strandat 771.596 kb on - strandat 771.670 kb on - strand, within MIT1002_00704at 771.681 kb on - strand, within MIT1002_00704at 771.708 kb on + strand, within MIT1002_00704at 771.732 kb on - strand, within MIT1002_00704at 771.803 kb on + strand, within MIT1002_00704

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3
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768,864 - +0.2
768,975 - MIT1002_00701 0.11 -0.2
768,989 - MIT1002_00701 0.12 -1.0
768,989 - MIT1002_00701 0.12 -0.9
769,087 + MIT1002_00701 0.22 +1.2
769,093 - MIT1002_00701 0.23 -1.0
769,154 - MIT1002_00701 0.29 -0.8
769,186 + MIT1002_00701 0.33 +0.0
769,223 - MIT1002_00701 0.36 -0.9
769,263 + MIT1002_00701 0.40 -0.1
769,264 - MIT1002_00701 0.40 -0.2
769,271 - MIT1002_00701 0.41 -0.1
769,423 - MIT1002_00701 0.57 +0.8
769,479 + MIT1002_00701 0.62 +0.3
769,497 + MIT1002_00701 0.64 +0.2
769,590 - MIT1002_00701 0.74 -0.8
769,615 + MIT1002_00701 0.76 +2.9
769,640 + MIT1002_00701 0.79 -0.1
769,640 + MIT1002_00701 0.79 -0.0
769,640 + MIT1002_00701 0.79 +1.1
769,648 - MIT1002_00701 0.79 +1.0
769,691 - MIT1002_00701 0.84 +0.2
769,732 + MIT1002_00701 0.88 -0.1
769,801 + +2.4
769,801 + -1.5
769,807 - +1.3
769,809 - +0.7
769,888 + -1.7
769,888 + -0.4
769,894 + +1.0
769,945 - MIT1002_00702 0.11 -0.8
769,971 + MIT1002_00702 0.14 -0.6
770,002 + MIT1002_00702 0.17 -0.2
770,040 - MIT1002_00702 0.21 -0.6
770,057 + MIT1002_00702 0.23 +1.0
770,077 + MIT1002_00702 0.25 -1.0
770,212 - MIT1002_00702 0.38 -0.6
770,220 + MIT1002_00702 0.39 +1.0
770,220 + MIT1002_00702 0.39 -0.0
770,220 + MIT1002_00702 0.39 +0.9
770,222 - MIT1002_00702 0.39 -1.5
770,223 - MIT1002_00702 0.40 +0.5
770,238 - MIT1002_00702 0.41 +0.2
770,247 - MIT1002_00702 0.42 -2.7
770,254 + MIT1002_00702 0.43 -0.3
770,262 - MIT1002_00702 0.43 +3.4
770,262 - MIT1002_00702 0.43 -0.1
770,292 - MIT1002_00702 0.47 +0.9
770,366 + MIT1002_00702 0.54 -0.5
770,376 + MIT1002_00702 0.55 +0.2
770,384 - MIT1002_00702 0.56 +1.1
770,389 - MIT1002_00702 0.56 -0.4
770,396 - MIT1002_00702 0.57 +0.1
770,531 + MIT1002_00702 0.71 +0.1
770,598 - MIT1002_00702 0.78 -0.2
770,655 + MIT1002_00702 0.83 -0.1
770,694 + MIT1002_00702 0.87 +0.7
770,694 + MIT1002_00702 0.87 -0.5
770,703 + MIT1002_00702 0.88 +0.5
770,725 + -2.1
770,780 + -0.4
770,788 - +0.9
770,917 - -3.2
771,022 + +0.5
771,029 - -0.9
771,029 - +1.9
771,060 - MIT1002_00703 0.15 +1.0
771,079 - MIT1002_00703 0.18 +0.1
771,112 + MIT1002_00703 0.23 -0.1
771,141 - MIT1002_00703 0.27 +0.0
771,219 + MIT1002_00703 0.39 +0.4
771,222 - MIT1002_00703 0.40 +0.9
771,227 - MIT1002_00703 0.40 -1.6
771,264 + MIT1002_00703 0.46 +0.3
771,376 - MIT1002_00703 0.63 -1.0
771,583 + -0.6
771,583 + -1.2
771,588 + +0.7
771,596 - -2.2
771,596 - -1.1
771,670 - MIT1002_00704 0.35 -3.1
771,681 - MIT1002_00704 0.38 -0.2
771,708 + MIT1002_00704 0.46 -0.4
771,732 - MIT1002_00704 0.53 -1.6
771,803 + MIT1002_00704 0.74 +0.9

Or see this region's nucleotide sequence