Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00282 and MIT1002_00283 are separated by 118 nucleotides MIT1002_00283 and MIT1002_00284 are separated by 24 nucleotides
MIT1002_00282: MIT1002_00282 - Hydrogenase isoenzymes formation protein HypE, at 307,260 to 308,312
_00282
MIT1002_00283: MIT1002_00283 - Mercuric resistance operon regulatory protein, at 308,431 to 308,841
_00283
MIT1002_00284: MIT1002_00284 - Copper-exporting P-type ATPase A, at 308,866 to 311,214
_00284
Position (kb) 308
309 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 307.446 kb on - strand, within MIT1002_00282 at 307.446 kb on - strand, within MIT1002_00282 at 307.478 kb on - strand, within MIT1002_00282 at 307.526 kb on - strand, within MIT1002_00282 at 307.545 kb on - strand, within MIT1002_00282 at 307.568 kb on + strand, within MIT1002_00282 at 307.573 kb on + strand, within MIT1002_00282 at 307.576 kb on - strand, within MIT1002_00282 at 307.586 kb on - strand, within MIT1002_00282 at 307.637 kb on + strand, within MIT1002_00282 at 307.737 kb on + strand, within MIT1002_00282 at 307.786 kb on - strand, within MIT1002_00282 at 307.826 kb on - strand, within MIT1002_00282 at 307.826 kb on - strand, within MIT1002_00282 at 307.826 kb on - strand, within MIT1002_00282 at 307.839 kb on - strand, within MIT1002_00282 at 307.848 kb on + strand, within MIT1002_00282 at 307.861 kb on - strand, within MIT1002_00282 at 307.861 kb on - strand, within MIT1002_00282 at 307.933 kb on - strand, within MIT1002_00282 at 307.951 kb on + strand, within MIT1002_00282 at 307.974 kb on + strand, within MIT1002_00282 at 307.974 kb on + strand, within MIT1002_00282 at 307.982 kb on - strand, within MIT1002_00282 at 308.044 kb on + strand, within MIT1002_00282 at 308.085 kb on - strand, within MIT1002_00282 at 308.136 kb on - strand, within MIT1002_00282 at 308.229 kb on - strand at 308.286 kb on + strand at 308.321 kb on + strand at 308.321 kb on + strand at 308.321 kb on + strand at 308.329 kb on - strand at 308.329 kb on - strand at 308.329 kb on - strand at 308.338 kb on + strand at 308.341 kb on - strand at 308.345 kb on + strand at 308.345 kb on + strand at 308.345 kb on + strand at 308.353 kb on - strand at 308.353 kb on - strand at 308.355 kb on + strand at 308.360 kb on + strand at 308.360 kb on + strand at 308.377 kb on + strand at 308.386 kb on - strand at 308.458 kb on + strand at 308.467 kb on + strand at 308.477 kb on + strand, within MIT1002_00283 at 308.663 kb on - strand, within MIT1002_00283 at 308.687 kb on + strand, within MIT1002_00283 at 308.696 kb on + strand, within MIT1002_00283 at 308.704 kb on - strand, within MIT1002_00283 at 308.707 kb on + strand, within MIT1002_00283 at 308.711 kb on + strand, within MIT1002_00283 at 308.726 kb on + strand, within MIT1002_00283 at 308.726 kb on + strand, within MIT1002_00283 at 308.726 kb on + strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.734 kb on - strand, within MIT1002_00283 at 308.941 kb on - strand at 308.998 kb on - strand at 309.060 kb on + strand at 309.060 kb on + strand at 309.072 kb on + strand at 309.114 kb on - strand, within MIT1002_00284 at 309.114 kb on - strand, within MIT1002_00284 at 309.141 kb on + strand, within MIT1002_00284 at 309.149 kb on - strand, within MIT1002_00284 at 309.160 kb on + strand, within MIT1002_00284 at 309.333 kb on + strand, within MIT1002_00284 at 309.377 kb on + strand, within MIT1002_00284 at 309.383 kb on + strand, within MIT1002_00284 at 309.393 kb on + strand, within MIT1002_00284 at 309.492 kb on + strand, within MIT1002_00284 at 309.671 kb on - strand, within MIT1002_00284 at 309.749 kb on + strand, within MIT1002_00284 at 309.749 kb on + strand, within MIT1002_00284 at 309.749 kb on + strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.757 kb on - strand, within MIT1002_00284 at 309.823 kb on + strand, within MIT1002_00284 at 309.828 kb on + strand, within MIT1002_00284 at 309.836 kb on - strand, within MIT1002_00284 at 309.836 kb on - strand, within MIT1002_00284
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 307,446 - MIT1002_00282 0.18 -0.1 307,446 - MIT1002_00282 0.18 -0.7 307,478 - MIT1002_00282 0.21 +1.0 307,526 - MIT1002_00282 0.25 -0.0 307,545 - MIT1002_00282 0.27 -0.9 307,568 + MIT1002_00282 0.29 +0.0 307,573 + MIT1002_00282 0.30 -0.4 307,576 - MIT1002_00282 0.30 +0.6 307,586 - MIT1002_00282 0.31 +0.8 307,637 + MIT1002_00282 0.36 -1.1 307,737 + MIT1002_00282 0.45 -0.5 307,786 - MIT1002_00282 0.50 -0.9 307,826 - MIT1002_00282 0.54 +1.2 307,826 - MIT1002_00282 0.54 +2.9 307,826 - MIT1002_00282 0.54 +0.6 307,839 - MIT1002_00282 0.55 +0.9 307,848 + MIT1002_00282 0.56 -1.0 307,861 - MIT1002_00282 0.57 -0.5 307,861 - MIT1002_00282 0.57 -0.7 307,933 - MIT1002_00282 0.64 -1.8 307,951 + MIT1002_00282 0.66 +1.1 307,974 + MIT1002_00282 0.68 +1.0 307,974 + MIT1002_00282 0.68 +0.3 307,982 - MIT1002_00282 0.69 -0.1 308,044 + MIT1002_00282 0.74 -0.2 308,085 - MIT1002_00282 0.78 -0.8 308,136 - MIT1002_00282 0.83 -0.0 308,229 - +1.2 308,286 + -0.5 308,321 + +0.1 308,321 + -0.9 308,321 + +0.6 308,329 - +0.2 308,329 - +0.9 308,329 - +0.3 308,338 + -0.3 308,341 - +1.0 308,345 + +1.0 308,345 + -0.1 308,345 + +0.6 308,353 - -1.3 308,353 - +0.9 308,355 + +0.1 308,360 + -1.2 308,360 + +1.1 308,377 + +0.1 308,386 - -0.1 308,458 + +0.3 308,467 + +0.9 308,477 + MIT1002_00283 0.11 -0.5 308,663 - MIT1002_00283 0.56 -0.5 308,687 + MIT1002_00283 0.62 +1.7 308,696 + MIT1002_00283 0.64 +1.5 308,704 - MIT1002_00283 0.66 -0.3 308,707 + MIT1002_00283 0.67 -2.0 308,711 + MIT1002_00283 0.68 +0.4 308,726 + MIT1002_00283 0.72 -0.3 308,726 + MIT1002_00283 0.72 +0.7 308,726 + MIT1002_00283 0.72 +1.0 308,734 - MIT1002_00283 0.74 +0.1 308,734 - MIT1002_00283 0.74 -1.2 308,734 - MIT1002_00283 0.74 -0.8 308,734 - MIT1002_00283 0.74 +0.7 308,734 - MIT1002_00283 0.74 +0.1 308,734 - MIT1002_00283 0.74 -0.7 308,941 - -0.7 308,998 - -0.4 309,060 + +1.0 309,060 + -0.1 309,072 + +0.5 309,114 - MIT1002_00284 0.11 +0.1 309,114 - MIT1002_00284 0.11 +0.5 309,141 + MIT1002_00284 0.12 +1.4 309,149 - MIT1002_00284 0.12 -0.0 309,160 + MIT1002_00284 0.13 +1.2 309,333 + MIT1002_00284 0.20 -0.3 309,377 + MIT1002_00284 0.22 +0.9 309,383 + MIT1002_00284 0.22 -1.1 309,393 + MIT1002_00284 0.22 -0.6 309,492 + MIT1002_00284 0.27 -0.4 309,671 - MIT1002_00284 0.34 -0.6 309,749 + MIT1002_00284 0.38 -1.2 309,749 + MIT1002_00284 0.38 +0.9 309,749 + MIT1002_00284 0.38 +0.3 309,757 - MIT1002_00284 0.38 +0.2 309,757 - MIT1002_00284 0.38 +1.9 309,757 - MIT1002_00284 0.38 -0.5 309,757 - MIT1002_00284 0.38 -0.9 309,757 - MIT1002_00284 0.38 -0.8 309,757 - MIT1002_00284 0.38 -0.5 309,823 + MIT1002_00284 0.41 -2.0 309,828 + MIT1002_00284 0.41 +0.0 309,836 - MIT1002_00284 0.41 -0.6 309,836 - MIT1002_00284 0.41 -1.1
Or see this region's nucleotide sequence