Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00272

Experiment: monoculture; Experiment C, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00271 and MIT1002_00272 are separated by 14 nucleotidesMIT1002_00272 and MIT1002_00273 overlap by 4 nucleotidesMIT1002_00273 and MIT1002_00274 are separated by 1 nucleotides MIT1002_00271: MIT1002_00271 - hypothetical protein, at 297,120 to 298,343 _00271 MIT1002_00272: MIT1002_00272 - Hydrogenase 2 maturation protease, at 298,358 to 298,912 _00272 MIT1002_00273: MIT1002_00273 - hypothetical protein, at 298,909 to 299,343 _00273 MIT1002_00274: MIT1002_00274 - Uptake hydrogenase small subunit precursor, at 299,345 to 300,343 _00274 Position (kb) 298 299Strain fitness (log2 ratio) -3 -2 -1 0 1at 297.447 kb on + strand, within MIT1002_00271at 297.539 kb on + strand, within MIT1002_00271at 297.539 kb on + strand, within MIT1002_00271at 297.581 kb on + strand, within MIT1002_00271at 297.589 kb on - strand, within MIT1002_00271at 297.589 kb on - strand, within MIT1002_00271at 297.607 kb on + strand, within MIT1002_00271at 297.615 kb on - strand, within MIT1002_00271at 297.622 kb on - strand, within MIT1002_00271at 297.636 kb on - strand, within MIT1002_00271at 297.694 kb on + strand, within MIT1002_00271at 297.744 kb on + strand, within MIT1002_00271at 297.752 kb on - strand, within MIT1002_00271at 297.774 kb on + strand, within MIT1002_00271at 297.789 kb on - strand, within MIT1002_00271at 297.796 kb on + strand, within MIT1002_00271at 297.803 kb on + strand, within MIT1002_00271at 297.806 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.882 kb on - strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.896 kb on - strand, within MIT1002_00271at 297.948 kb on + strand, within MIT1002_00271at 297.955 kb on + strand, within MIT1002_00271at 297.955 kb on + strand, within MIT1002_00271at 298.034 kb on - strand, within MIT1002_00271at 298.034 kb on - strand, within MIT1002_00271at 298.126 kb on + strand, within MIT1002_00271at 298.171 kb on + strand, within MIT1002_00271at 298.224 kb on + strandat 298.248 kb on - strandat 298.248 kb on - strandat 298.248 kb on - strandat 298.332 kb on + strandat 298.347 kb on + strandat 298.445 kb on - strand, within MIT1002_00272at 298.484 kb on + strand, within MIT1002_00272at 298.492 kb on - strand, within MIT1002_00272at 298.503 kb on - strand, within MIT1002_00272at 298.528 kb on + strand, within MIT1002_00272at 298.550 kb on + strand, within MIT1002_00272at 298.569 kb on - strand, within MIT1002_00272at 298.606 kb on - strand, within MIT1002_00272at 298.676 kb on + strand, within MIT1002_00272at 298.734 kb on + strand, within MIT1002_00272at 298.818 kb on - strand, within MIT1002_00272at 298.869 kb on + strandat 298.901 kb on - strandat 298.969 kb on + strand, within MIT1002_00273at 298.998 kb on - strand, within MIT1002_00273at 299.098 kb on - strand, within MIT1002_00273at 299.100 kb on + strand, within MIT1002_00273at 299.108 kb on - strand, within MIT1002_00273at 299.108 kb on - strand, within MIT1002_00273at 299.124 kb on + strand, within MIT1002_00273at 299.126 kb on + strand, within MIT1002_00273at 299.161 kb on - strand, within MIT1002_00273at 299.225 kb on - strand, within MIT1002_00273at 299.236 kb on - strand, within MIT1002_00273at 299.262 kb on - strand, within MIT1002_00273at 299.276 kb on + strand, within MIT1002_00273at 299.282 kb on - strand, within MIT1002_00273at 299.329 kb on + strandat 299.329 kb on + strandat 299.482 kb on - strand, within MIT1002_00274at 299.521 kb on + strand, within MIT1002_00274at 299.531 kb on + strand, within MIT1002_00274at 299.531 kb on + strand, within MIT1002_00274at 299.531 kb on + strand, within MIT1002_00274at 299.534 kb on - strand, within MIT1002_00274at 299.554 kb on - strand, within MIT1002_00274at 299.564 kb on - strand, within MIT1002_00274at 299.658 kb on - strand, within MIT1002_00274at 299.658 kb on - strand, within MIT1002_00274at 299.724 kb on + strand, within MIT1002_00274at 299.724 kb on + strand, within MIT1002_00274at 299.727 kb on - strand, within MIT1002_00274at 299.741 kb on - strand, within MIT1002_00274at 299.809 kb on + strand, within MIT1002_00274at 299.844 kb on - strand, within MIT1002_00274

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3
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297,447 + MIT1002_00271 0.27 -0.9
297,539 + MIT1002_00271 0.34 +1.1
297,539 + MIT1002_00271 0.34 +0.1
297,581 + MIT1002_00271 0.38 -0.8
297,589 - MIT1002_00271 0.38 +0.1
297,589 - MIT1002_00271 0.38 +1.1
297,607 + MIT1002_00271 0.40 -0.8
297,615 - MIT1002_00271 0.40 -0.5
297,622 - MIT1002_00271 0.41 -0.8
297,636 - MIT1002_00271 0.42 -0.6
297,694 + MIT1002_00271 0.47 +0.0
297,744 + MIT1002_00271 0.51 +0.7
297,752 - MIT1002_00271 0.52 +0.3
297,774 + MIT1002_00271 0.53 -0.2
297,789 - MIT1002_00271 0.55 +0.1
297,796 + MIT1002_00271 0.55 +0.1
297,803 + MIT1002_00271 0.56 -0.5
297,806 + MIT1002_00271 0.56 +0.2
297,817 + MIT1002_00271 0.57 -1.7
297,817 + MIT1002_00271 0.57 -0.3
297,817 + MIT1002_00271 0.57 -0.1
297,825 - MIT1002_00271 0.58 +1.5
297,825 - MIT1002_00271 0.58 -0.8
297,825 - MIT1002_00271 0.58 -1.3
297,882 - MIT1002_00271 0.62 +0.8
297,888 + MIT1002_00271 0.63 +0.3
297,888 + MIT1002_00271 0.63 +0.1
297,888 + MIT1002_00271 0.63 +0.4
297,896 - MIT1002_00271 0.63 -0.6
297,948 + MIT1002_00271 0.68 +1.1
297,955 + MIT1002_00271 0.68 +0.2
297,955 + MIT1002_00271 0.68 -0.8
298,034 - MIT1002_00271 0.75 -0.6
298,034 - MIT1002_00271 0.75 -2.8
298,126 + MIT1002_00271 0.82 -1.8
298,171 + MIT1002_00271 0.86 -0.8
298,224 + +0.1
298,248 - +0.6
298,248 - +0.5
298,248 - +0.9
298,332 + +1.3
298,347 + -0.3
298,445 - MIT1002_00272 0.16 -0.5
298,484 + MIT1002_00272 0.23 -1.2
298,492 - MIT1002_00272 0.24 -0.2
298,503 - MIT1002_00272 0.26 -0.4
298,528 + MIT1002_00272 0.31 -1.5
298,550 + MIT1002_00272 0.35 -0.2
298,569 - MIT1002_00272 0.38 -0.4
298,606 - MIT1002_00272 0.45 -0.6
298,676 + MIT1002_00272 0.57 -0.6
298,734 + MIT1002_00272 0.68 -1.2
298,818 - MIT1002_00272 0.83 +0.9
298,869 + +1.1
298,901 - -0.1
298,969 + MIT1002_00273 0.14 +0.3
298,998 - MIT1002_00273 0.20 -0.2
299,098 - MIT1002_00273 0.43 -1.8
299,100 + MIT1002_00273 0.44 -1.4
299,108 - MIT1002_00273 0.46 +1.6
299,108 - MIT1002_00273 0.46 +0.7
299,124 + MIT1002_00273 0.49 +1.1
299,126 + MIT1002_00273 0.50 -0.4
299,161 - MIT1002_00273 0.58 -2.0
299,225 - MIT1002_00273 0.73 +1.5
299,236 - MIT1002_00273 0.75 +0.3
299,262 - MIT1002_00273 0.81 -0.1
299,276 + MIT1002_00273 0.84 -1.0
299,282 - MIT1002_00273 0.86 -0.1
299,329 + +0.6
299,329 + +0.4
299,482 - MIT1002_00274 0.14 +0.5
299,521 + MIT1002_00274 0.18 -0.2
299,531 + MIT1002_00274 0.19 +0.3
299,531 + MIT1002_00274 0.19 -0.1
299,531 + MIT1002_00274 0.19 +0.3
299,534 - MIT1002_00274 0.19 -0.3
299,554 - MIT1002_00274 0.21 +0.1
299,564 - MIT1002_00274 0.22 +1.2
299,658 - MIT1002_00274 0.31 -1.4
299,658 - MIT1002_00274 0.31 -0.3
299,724 + MIT1002_00274 0.38 -1.0
299,724 + MIT1002_00274 0.38 -0.3
299,727 - MIT1002_00274 0.38 +0.4
299,741 - MIT1002_00274 0.40 +0.2
299,809 + MIT1002_00274 0.46 +0.1
299,844 - MIT1002_00274 0.50 -1.0

Or see this region's nucleotide sequence