Experiment: monoculture; Experiment C, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00246 and MIT1002_00247 overlap by 17 nucleotides MIT1002_00247 and MIT1002_00248 are separated by 194 nucleotides MIT1002_00248 and MIT1002_00249 are separated by 418 nucleotides MIT1002_00249 and MIT1002_00250 overlap by 1 nucleotides
MIT1002_00246: MIT1002_00246 - Sensor kinase CusS, at 273,847 to 275,253
_00246
MIT1002_00247: MIT1002_00247 - Transcriptional regulatory protein CusR, at 275,237 to 275,920
_00247
MIT1002_00248: MIT1002_00248 - hypothetical protein, at 276,115 to 276,249
_00248
MIT1002_00249: MIT1002_00249 - Protein of unknown function, DUF, at 276,668 to 277,177
_00249
MIT1002_00250: MIT1002_00250 - type I secretion outer membrane protein, TolC family, at 277,177 to 278,541
_00250
Position (kb) 276
277 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 275.201 kb on - strand at 275.203 kb on - strand at 275.203 kb on - strand at 275.259 kb on - strand at 275.272 kb on + strand at 275.296 kb on + strand at 275.411 kb on + strand, within MIT1002_00247 at 275.411 kb on + strand, within MIT1002_00247 at 275.503 kb on + strand, within MIT1002_00247 at 275.511 kb on - strand, within MIT1002_00247 at 275.537 kb on + strand, within MIT1002_00247 at 275.554 kb on + strand, within MIT1002_00247 at 275.554 kb on + strand, within MIT1002_00247 at 275.576 kb on - strand, within MIT1002_00247 at 275.587 kb on + strand, within MIT1002_00247 at 275.597 kb on - strand, within MIT1002_00247 at 275.754 kb on - strand, within MIT1002_00247 at 275.769 kb on - strand, within MIT1002_00247 at 275.769 kb on - strand, within MIT1002_00247 at 275.816 kb on + strand, within MIT1002_00247 at 275.829 kb on - strand, within MIT1002_00247 at 275.865 kb on - strand at 275.927 kb on + strand at 275.959 kb on + strand at 275.959 kb on + strand at 275.959 kb on + strand at 275.967 kb on - strand at 275.969 kb on + strand at 275.969 kb on + strand at 275.969 kb on + strand at 275.969 kb on + strand at 275.977 kb on - strand at 276.048 kb on + strand at 276.048 kb on + strand at 276.056 kb on - strand at 276.056 kb on - strand at 276.056 kb on - strand at 276.319 kb on + strand at 276.379 kb on + strand at 276.486 kb on - strand at 276.494 kb on - strand at 276.496 kb on + strand at 276.496 kb on + strand at 276.501 kb on + strand at 276.501 kb on + strand at 276.501 kb on + strand at 276.504 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.554 kb on - strand at 276.554 kb on - strand at 276.564 kb on - strand at 276.590 kb on - strand at 276.598 kb on + strand at 276.604 kb on + strand at 276.612 kb on - strand at 276.635 kb on - strand at 276.697 kb on + strand at 276.737 kb on - strand, within MIT1002_00249 at 276.760 kb on - strand, within MIT1002_00249 at 276.770 kb on - strand, within MIT1002_00249 at 276.794 kb on - strand, within MIT1002_00249 at 276.819 kb on - strand, within MIT1002_00249 at 276.819 kb on - strand, within MIT1002_00249 at 276.831 kb on + strand, within MIT1002_00249 at 276.925 kb on + strand, within MIT1002_00249 at 276.974 kb on + strand, within MIT1002_00249 at 277.036 kb on - strand, within MIT1002_00249 at 277.098 kb on - strand, within MIT1002_00249 at 277.133 kb on + strand at 277.141 kb on - strand at 277.156 kb on + strand at 277.158 kb on + strand at 277.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 3 remove 275,201 - +0.3 275,203 - +0.7 275,203 - -0.3 275,259 - +0.2 275,272 + +0.3 275,296 + -0.4 275,411 + MIT1002_00247 0.25 +0.6 275,411 + MIT1002_00247 0.25 -0.1 275,503 + MIT1002_00247 0.39 +0.2 275,511 - MIT1002_00247 0.40 -0.3 275,537 + MIT1002_00247 0.44 -0.7 275,554 + MIT1002_00247 0.46 +0.7 275,554 + MIT1002_00247 0.46 -0.4 275,576 - MIT1002_00247 0.50 -0.2 275,587 + MIT1002_00247 0.51 +1.5 275,597 - MIT1002_00247 0.53 +0.6 275,754 - MIT1002_00247 0.76 -1.2 275,769 - MIT1002_00247 0.78 +0.5 275,769 - MIT1002_00247 0.78 -0.2 275,816 + MIT1002_00247 0.85 -1.1 275,829 - MIT1002_00247 0.87 -0.0 275,865 - +0.2 275,927 + +0.7 275,959 + -0.0 275,959 + +0.5 275,959 + -0.5 275,967 - -0.7 275,969 + -0.4 275,969 + -0.6 275,969 + +0.2 275,969 + -2.2 275,977 - -0.4 276,048 + +0.6 276,048 + -1.1 276,056 - +0.3 276,056 - -1.9 276,056 - +2.9 276,319 + -1.0 276,379 + +0.5 276,486 - +0.7 276,494 - -0.9 276,496 + -2.0 276,496 + -0.1 276,501 + -0.8 276,501 + +1.2 276,501 + +0.1 276,504 - +0.2 276,509 - -0.5 276,509 - -0.0 276,509 - +0.7 276,509 - -1.7 276,509 - +0.1 276,509 - -1.5 276,554 - -0.2 276,554 - +0.8 276,564 - -0.2 276,590 - -0.3 276,598 + +0.4 276,604 + -0.5 276,612 - -0.7 276,635 - -0.5 276,697 + -1.3 276,737 - MIT1002_00249 0.14 -0.4 276,760 - MIT1002_00249 0.18 -0.3 276,770 - MIT1002_00249 0.20 -0.2 276,794 - MIT1002_00249 0.25 -1.3 276,819 - MIT1002_00249 0.30 -0.1 276,819 - MIT1002_00249 0.30 -0.9 276,831 + MIT1002_00249 0.32 -1.4 276,925 + MIT1002_00249 0.50 +0.1 276,974 + MIT1002_00249 0.60 +1.5 277,036 - MIT1002_00249 0.72 +0.5 277,098 - MIT1002_00249 0.84 -1.7 277,133 + +0.3 277,141 - +0.7 277,156 + -1.0 277,158 + +0.9 277,158 - +0.3
Or see this region's nucleotide sequence