Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04204

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04203 and MIT1002_04204 are separated by 2 nucleotidesMIT1002_04204 and MIT1002_04205 are separated by 52 nucleotidesMIT1002_04205 and MIT1002_04206 are separated by 29 nucleotides MIT1002_04203: MIT1002_04203 - hypothetical protein, at 68,275 to 69,204 _04203 MIT1002_04204: MIT1002_04204 - putative chromate transport protein, at 69,207 to 70,664 _04204 MIT1002_04205: MIT1002_04205 - hypothetical protein, at 70,717 to 71,625 _04205 MIT1002_04206: MIT1002_04206 - site-specific tyrosine recombinase XerC, at 71,655 to 72,662 _04206 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1at 68.321 kb on - strandat 68.336 kb on - strandat 68.410 kb on - strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.473 kb on - strand, within MIT1002_04203at 68.473 kb on - strand, within MIT1002_04203at 68.520 kb on - strand, within MIT1002_04203at 68.599 kb on + strand, within MIT1002_04203at 68.612 kb on + strand, within MIT1002_04203at 68.692 kb on + strand, within MIT1002_04203at 68.711 kb on - strand, within MIT1002_04203at 68.748 kb on + strand, within MIT1002_04203at 68.748 kb on + strand, within MIT1002_04203at 68.799 kb on + strand, within MIT1002_04203at 68.804 kb on + strand, within MIT1002_04203at 68.828 kb on - strand, within MIT1002_04203at 68.852 kb on - strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.017 kb on - strand, within MIT1002_04203at 69.040 kb on + strand, within MIT1002_04203at 69.048 kb on - strand, within MIT1002_04203at 69.048 kb on - strand, within MIT1002_04203at 69.050 kb on + strand, within MIT1002_04203at 69.050 kb on + strand, within MIT1002_04203at 69.199 kb on + strandat 69.292 kb on - strandat 69.292 kb on - strandat 69.303 kb on + strandat 69.310 kb on + strandat 69.310 kb on + strandat 69.310 kb on + strandat 69.310 kb on - strandat 69.318 kb on - strandat 69.386 kb on + strand, within MIT1002_04204at 69.390 kb on - strand, within MIT1002_04204at 69.394 kb on + strand, within MIT1002_04204at 69.419 kb on + strand, within MIT1002_04204at 69.428 kb on + strand, within MIT1002_04204at 69.449 kb on + strand, within MIT1002_04204at 69.457 kb on - strand, within MIT1002_04204at 69.467 kb on + strand, within MIT1002_04204at 69.470 kb on - strand, within MIT1002_04204at 69.475 kb on - strand, within MIT1002_04204at 69.496 kb on + strand, within MIT1002_04204at 69.522 kb on + strand, within MIT1002_04204at 69.536 kb on + strand, within MIT1002_04204at 69.536 kb on + strand, within MIT1002_04204at 69.559 kb on - strand, within MIT1002_04204at 69.693 kb on + strand, within MIT1002_04204at 69.705 kb on + strand, within MIT1002_04204at 69.838 kb on + strand, within MIT1002_04204at 69.846 kb on - strand, within MIT1002_04204at 69.895 kb on + strand, within MIT1002_04204at 69.946 kb on + strand, within MIT1002_04204at 69.954 kb on - strand, within MIT1002_04204at 69.969 kb on - strand, within MIT1002_04204at 69.987 kb on - strand, within MIT1002_04204at 70.001 kb on + strand, within MIT1002_04204at 70.001 kb on + strand, within MIT1002_04204at 70.026 kb on - strand, within MIT1002_04204at 70.068 kb on + strand, within MIT1002_04204at 70.073 kb on - strand, within MIT1002_04204at 70.092 kb on + strand, within MIT1002_04204at 70.097 kb on + strand, within MIT1002_04204at 70.105 kb on - strand, within MIT1002_04204at 70.115 kb on - strand, within MIT1002_04204at 70.143 kb on - strand, within MIT1002_04204at 70.152 kb on + strand, within MIT1002_04204at 70.161 kb on + strand, within MIT1002_04204at 70.166 kb on + strand, within MIT1002_04204at 70.166 kb on + strand, within MIT1002_04204at 70.169 kb on - strand, within MIT1002_04204at 70.179 kb on + strand, within MIT1002_04204at 70.196 kb on + strand, within MIT1002_04204at 70.204 kb on - strand, within MIT1002_04204at 70.227 kb on - strand, within MIT1002_04204at 70.249 kb on + strand, within MIT1002_04204at 70.264 kb on - strand, within MIT1002_04204at 70.267 kb on - strand, within MIT1002_04204at 70.293 kb on + strand, within MIT1002_04204at 70.343 kb on + strand, within MIT1002_04204at 70.456 kb on + strand, within MIT1002_04204at 70.466 kb on + strand, within MIT1002_04204at 70.481 kb on + strand, within MIT1002_04204at 70.481 kb on + strand, within MIT1002_04204at 70.481 kb on + strand, within MIT1002_04204at 70.481 kb on + strand, within MIT1002_04204at 70.482 kb on - strand, within MIT1002_04204at 70.489 kb on - strand, within MIT1002_04204at 70.489 kb on - strand, within MIT1002_04204at 70.499 kb on + strand, within MIT1002_04204at 70.507 kb on - strand, within MIT1002_04204at 70.522 kb on - strandat 70.552 kb on - strandat 70.573 kb on + strandat 70.609 kb on + strandat 70.614 kb on + strandat 70.614 kb on + strandat 70.657 kb on - strandat 70.665 kb on + strandat 70.744 kb on + strandat 70.835 kb on - strand, within MIT1002_04205at 70.856 kb on - strand, within MIT1002_04205at 70.856 kb on - strand, within MIT1002_04205at 70.876 kb on + strand, within MIT1002_04205at 70.938 kb on + strand, within MIT1002_04205at 71.004 kb on + strand, within MIT1002_04205at 71.058 kb on + strand, within MIT1002_04205at 71.066 kb on - strand, within MIT1002_04205at 71.071 kb on + strand, within MIT1002_04205at 71.071 kb on + strand, within MIT1002_04205at 71.108 kb on + strand, within MIT1002_04205at 71.168 kb on - strand, within MIT1002_04205at 71.210 kb on - strand, within MIT1002_04205at 71.264 kb on - strand, within MIT1002_04205at 71.271 kb on - strand, within MIT1002_04205at 71.281 kb on + strand, within MIT1002_04205at 71.335 kb on - strand, within MIT1002_04205at 71.344 kb on + strand, within MIT1002_04205at 71.362 kb on - strand, within MIT1002_04205at 71.372 kb on + strand, within MIT1002_04205at 71.380 kb on - strand, within MIT1002_04205at 71.499 kb on - strand, within MIT1002_04205at 71.499 kb on - strand, within MIT1002_04205at 71.517 kb on + strand, within MIT1002_04205at 71.518 kb on + strand, within MIT1002_04205at 71.568 kb on + strandat 71.568 kb on + strandat 71.568 kb on + strandat 71.568 kb on + strandat 71.581 kb on - strandat 71.583 kb on - strandat 71.589 kb on - strandat 71.603 kb on - strandat 71.613 kb on - strandat 71.629 kb on - strandat 71.652 kb on + strandat 71.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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68,321 - +0.6
68,336 - -0.1
68,410 - MIT1002_04203 0.15 +0.6
68,465 + MIT1002_04203 0.20 +0.2
68,465 + MIT1002_04203 0.20 -0.1
68,465 + MIT1002_04203 0.20 -0.3
68,473 - MIT1002_04203 0.21 -0.1
68,473 - MIT1002_04203 0.21 +0.2
68,520 - MIT1002_04203 0.26 -0.2
68,599 + MIT1002_04203 0.35 -0.2
68,612 + MIT1002_04203 0.36 -0.7
68,692 + MIT1002_04203 0.45 -1.9
68,711 - MIT1002_04203 0.47 -0.6
68,748 + MIT1002_04203 0.51 -0.1
68,748 + MIT1002_04203 0.51 -0.4
68,799 + MIT1002_04203 0.56 +0.6
68,804 + MIT1002_04203 0.57 -1.1
68,828 - MIT1002_04203 0.59 -0.2
68,852 - MIT1002_04203 0.62 +0.3
69,009 + MIT1002_04203 0.79 -1.6
69,009 + MIT1002_04203 0.79 +0.5
69,009 + MIT1002_04203 0.79 -0.9
69,017 - MIT1002_04203 0.80 -0.1
69,040 + MIT1002_04203 0.82 -0.3
69,048 - MIT1002_04203 0.83 -0.1
69,048 - MIT1002_04203 0.83 -0.7
69,050 + MIT1002_04203 0.83 +0.2
69,050 + MIT1002_04203 0.83 -0.4
69,199 + +0.1
69,292 - +0.4
69,292 - +0.1
69,303 + -0.1
69,310 + +0.1
69,310 + -0.0
69,310 + +0.3
69,310 - +0.6
69,318 - -1.4
69,386 + MIT1002_04204 0.12 +0.2
69,390 - MIT1002_04204 0.13 -0.1
69,394 + MIT1002_04204 0.13 +0.4
69,419 + MIT1002_04204 0.15 -0.8
69,428 + MIT1002_04204 0.15 +0.3
69,449 + MIT1002_04204 0.17 +0.3
69,457 - MIT1002_04204 0.17 -1.6
69,467 + MIT1002_04204 0.18 +1.1
69,470 - MIT1002_04204 0.18 -0.4
69,475 - MIT1002_04204 0.18 -0.2
69,496 + MIT1002_04204 0.20 +0.1
69,522 + MIT1002_04204 0.22 -0.8
69,536 + MIT1002_04204 0.23 +0.7
69,536 + MIT1002_04204 0.23 +0.1
69,559 - MIT1002_04204 0.24 +0.3
69,693 + MIT1002_04204 0.33 +0.6
69,705 + MIT1002_04204 0.34 -0.3
69,838 + MIT1002_04204 0.43 -0.5
69,846 - MIT1002_04204 0.44 -0.6
69,895 + MIT1002_04204 0.47 -0.4
69,946 + MIT1002_04204 0.51 +1.3
69,954 - MIT1002_04204 0.51 -0.5
69,969 - MIT1002_04204 0.52 +0.5
69,987 - MIT1002_04204 0.53 -0.5
70,001 + MIT1002_04204 0.54 +0.6
70,001 + MIT1002_04204 0.54 +0.7
70,026 - MIT1002_04204 0.56 -0.8
70,068 + MIT1002_04204 0.59 +0.2
70,073 - MIT1002_04204 0.59 +0.7
70,092 + MIT1002_04204 0.61 +0.5
70,097 + MIT1002_04204 0.61 +0.6
70,105 - MIT1002_04204 0.62 +0.5
70,115 - MIT1002_04204 0.62 -1.6
70,143 - MIT1002_04204 0.64 +0.2
70,152 + MIT1002_04204 0.65 -0.5
70,161 + MIT1002_04204 0.65 +0.9
70,166 + MIT1002_04204 0.66 +0.6
70,166 + MIT1002_04204 0.66 -0.2
70,169 - MIT1002_04204 0.66 -0.3
70,179 + MIT1002_04204 0.67 +0.9
70,196 + MIT1002_04204 0.68 +1.0
70,204 - MIT1002_04204 0.68 +0.3
70,227 - MIT1002_04204 0.70 -0.7
70,249 + MIT1002_04204 0.71 +0.3
70,264 - MIT1002_04204 0.72 -3.5
70,267 - MIT1002_04204 0.73 -0.1
70,293 + MIT1002_04204 0.74 -0.2
70,343 + MIT1002_04204 0.78 +0.8
70,456 + MIT1002_04204 0.86 +0.3
70,466 + MIT1002_04204 0.86 -0.7
70,481 + MIT1002_04204 0.87 -0.5
70,481 + MIT1002_04204 0.87 +0.4
70,481 + MIT1002_04204 0.87 +0.5
70,481 + MIT1002_04204 0.87 +1.1
70,482 - MIT1002_04204 0.87 +1.3
70,489 - MIT1002_04204 0.88 +0.6
70,489 - MIT1002_04204 0.88 -0.0
70,499 + MIT1002_04204 0.89 -0.7
70,507 - MIT1002_04204 0.89 -1.2
70,522 - -0.4
70,552 - -0.4
70,573 + +0.5
70,609 + -0.6
70,614 + -0.7
70,614 + -0.3
70,657 - +0.1
70,665 + -0.5
70,744 + -2.3
70,835 - MIT1002_04205 0.13 -0.4
70,856 - MIT1002_04205 0.15 -1.2
70,856 - MIT1002_04205 0.15 -0.0
70,876 + MIT1002_04205 0.17 -0.2
70,938 + MIT1002_04205 0.24 +1.2
71,004 + MIT1002_04205 0.32 -0.0
71,058 + MIT1002_04205 0.38 +0.4
71,066 - MIT1002_04205 0.38 +0.5
71,071 + MIT1002_04205 0.39 +0.4
71,071 + MIT1002_04205 0.39 -1.7
71,108 + MIT1002_04205 0.43 -0.9
71,168 - MIT1002_04205 0.50 -0.4
71,210 - MIT1002_04205 0.54 -0.0
71,264 - MIT1002_04205 0.60 -1.0
71,271 - MIT1002_04205 0.61 +0.5
71,281 + MIT1002_04205 0.62 +0.2
71,335 - MIT1002_04205 0.68 -0.7
71,344 + MIT1002_04205 0.69 +0.8
71,362 - MIT1002_04205 0.71 -0.4
71,372 + MIT1002_04205 0.72 +0.6
71,380 - MIT1002_04205 0.73 -1.4
71,499 - MIT1002_04205 0.86 +0.6
71,499 - MIT1002_04205 0.86 -0.0
71,517 + MIT1002_04205 0.88 -0.5
71,518 + MIT1002_04205 0.88 +0.4
71,568 + +0.8
71,568 + +0.3
71,568 + -1.7
71,568 + -0.1
71,581 - -2.0
71,583 - -1.2
71,589 - +0.1
71,603 - -0.7
71,613 - -0.6
71,629 - +0.3
71,652 + +0.5
71,664 + -0.2

Or see this region's nucleotide sequence