Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03864

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
4,326,977	-		MIT1002_03862	0.30	-1.1
4,326,984	+		MIT1002_03862	0.31	+0.6
4,327,035	+		MIT1002_03862	0.37	+0.0
4,327,035	+		MIT1002_03862	0.37	-1.2
4,327,040	+		MIT1002_03862	0.38	-0.9
4,327,048	-		MIT1002_03862	0.39	-1.1
4,327,048	-		MIT1002_03862	0.39	-1.4
4,327,048	-		MIT1002_03862	0.39	+0.5
4,327,088	-		MIT1002_03862	0.44	-0.9
4,327,098	-		MIT1002_03862	0.45	+1.6
4,327,105	-		MIT1002_03862	0.46	-0.6
4,327,198	+		MIT1002_03862	0.58	-0.2
4,327,218	+		MIT1002_03862	0.60	-1.4
4,327,218	+		MIT1002_03862	0.60	+0.1
4,327,218	+		MIT1002_03862	0.60	-0.9
4,327,219	-		MIT1002_03862	0.60	-1.1
4,327,225	-		MIT1002_03862	0.61	+1.2
4,327,242	+		MIT1002_03862	0.63	+0.0
4,327,262	+		MIT1002_03862	0.66	-0.1
4,327,262	+		MIT1002_03862	0.66	-0.6
4,327,270	-		MIT1002_03862	0.67	+0.5
4,327,292	+		MIT1002_03862	0.70	+1.6
4,327,305	+		MIT1002_03862	0.71	-0.0
4,327,318	-		MIT1002_03862	0.73	-2.2
4,327,378	+		MIT1002_03862	0.80	+0.3
4,327,384	+		MIT1002_03862	0.81	+0.7
4,327,396	+		MIT1002_03862	0.83	-0.4
4,327,438	-		MIT1002_03862	0.88	-1.2
4,327,463	-				+0.3
4,327,480	-				-0.7
4,327,525	-				-2.2
4,327,532	-				+1.2
4,327,559	-				-1.0
4,327,589	+				-0.6
4,327,589	+				+0.3
4,327,591	+				+1.7
4,327,599	-				+2.5
4,327,599	-				+1.1
4,327,599	-				-0.7
4,327,643	+				+0.6
4,327,645	+				-0.8
4,327,653	-				+0.1
4,327,653	-				-0.3
4,327,663	-		MIT1002_03863	0.12	-0.6
4,327,689	-		MIT1002_03863	0.23	-0.1
4,327,727	+		MIT1002_03863	0.39	-0.2
4,327,816	+		MIT1002_03863	0.77	+0.7
4,327,982	+				+0.3
4,328,000	-				+0.3
4,328,014	-				+0.7
4,328,043	-				-0.1
4,328,095	+		MIT1002_03864	0.12	+0.3
4,328,105	+		MIT1002_03864	0.13	+1.3
4,328,105	+		MIT1002_03864	0.13	+0.0
4,328,113	-		MIT1002_03864	0.13	-0.6
4,328,132	+		MIT1002_03864	0.15	+0.3
4,328,176	+		MIT1002_03864	0.17	+0.3
4,328,176	+		MIT1002_03864	0.17	-0.7
4,328,176	+		MIT1002_03864	0.17	+0.6
4,328,176	+		MIT1002_03864	0.17	-0.3
4,328,184	-		MIT1002_03864	0.18	-0.3
4,328,291	+		MIT1002_03864	0.24	-1.2
4,328,318	+		MIT1002_03864	0.26	-3.5
4,328,318	+		MIT1002_03864	0.26	-1.4
4,328,326	-		MIT1002_03864	0.27	-0.2
4,328,372	-		MIT1002_03864	0.29	-0.5
4,328,372	-		MIT1002_03864	0.29	-0.1
4,328,442	+		MIT1002_03864	0.34	+0.5
4,328,460	+		MIT1002_03864	0.35	-1.3
4,328,497	+		MIT1002_03864	0.37	+0.3
4,328,507	+		MIT1002_03864	0.38	-0.0
4,328,507	+		MIT1002_03864	0.38	+0.2
4,328,507	+		MIT1002_03864	0.38	+0.9
4,328,507	+		MIT1002_03864	0.38	+0.2
4,328,507	+		MIT1002_03864	0.38	-0.4
4,328,507	+		MIT1002_03864	0.38	-0.1
4,328,515	-		MIT1002_03864	0.38	+0.3
4,328,515	-		MIT1002_03864	0.38	-0.0
4,328,515	-		MIT1002_03864	0.38	-0.8
4,328,515	-		MIT1002_03864	0.38	+0.3
4,328,515	-		MIT1002_03864	0.38	-0.7
4,328,515	-		MIT1002_03864	0.38	+0.4
4,328,515	-		MIT1002_03864	0.38	+0.7
4,328,868	+		MIT1002_03864	0.60	+0.5
4,328,870	+		MIT1002_03864	0.60	+0.4
4,328,876	-		MIT1002_03864	0.61	-0.2
4,328,876	-		MIT1002_03864	0.61	+1.1
4,328,878	-		MIT1002_03864	0.61	-0.4
4,328,880	+		MIT1002_03864	0.61	-0.8
4,328,888	-		MIT1002_03864	0.61	+0.6
4,329,000	+		MIT1002_03864	0.68	+2.0
4,329,002	+		MIT1002_03864	0.69	-0.3
4,329,093	+		MIT1002_03864	0.74	-0.1
4,329,146	-		MIT1002_03864	0.77	-0.2
4,329,186	+		MIT1002_03864	0.80	+0.1
4,329,244	+		MIT1002_03864	0.84	-1.1
4,329,279	+		MIT1002_03864	0.86	-1.3
4,329,367	-				-0.0
4,329,446	+				+0.2
4,329,454	-				-0.6
4,329,455	-				-0.7
4,329,456	-				+1.4
4,329,570	+				+0.4
4,329,636	+		MIT1002_03865	0.11	+0.3
4,329,636	+		MIT1002_03865	0.11	-0.6
4,329,637	+		MIT1002_03865	0.11	-0.1
4,329,644	-		MIT1002_03865	0.12	+0.3
4,329,644	-		MIT1002_03865	0.12	-0.8
4,329,644	-		MIT1002_03865	0.12	+2.7
4,329,644	-		MIT1002_03865	0.12	+0.2
4,329,681	+		MIT1002_03865	0.16	-0.2
4,329,691	+		MIT1002_03865	0.17	-0.5
4,329,691	+		MIT1002_03865	0.17	+1.1
4,329,691	+		MIT1002_03865	0.17	+0.3
4,329,691	+		MIT1002_03865	0.17	-0.5
4,329,694	-		MIT1002_03865	0.18	+0.0
4,329,696	+		MIT1002_03865	0.18	+0.3
4,329,699	-		MIT1002_03865	0.18	-0.8
4,329,699	-		MIT1002_03865	0.18	-0.3
4,329,701	-		MIT1002_03865	0.18	+0.6
4,329,764	-		MIT1002_03865	0.26	+0.4
4,329,779	-		MIT1002_03865	0.27	+0.7
4,329,792	+		MIT1002_03865	0.29	-1.6
4,329,794	+		MIT1002_03865	0.29	+1.1
4,329,800	-		MIT1002_03865	0.30	-0.7
4,329,826	+		MIT1002_03865	0.33	-0.5
4,329,826	+		MIT1002_03865	0.33	+1.1
4,329,834	-		MIT1002_03865	0.34	+1.4
4,329,834	-		MIT1002_03865	0.34	+0.7
4,329,876	+		MIT1002_03865	0.38	-1.3
4,329,876	+		MIT1002_03865	0.38	-0.5
4,329,876	+		MIT1002_03865	0.38	+0.3
4,329,876	+		MIT1002_03865	0.38	-1.3
4,329,884	-		MIT1002_03865	0.39	+0.4
4,329,884	-		MIT1002_03865	0.39	+0.7
4,329,884	-		MIT1002_03865	0.39	-0.4
4,329,884	-		MIT1002_03865	0.39	-0.2
4,329,912	-		MIT1002_03865	0.42	+0.2
4,329,912	-		MIT1002_03865	0.42	-0.6
4,329,990	-		MIT1002_03865	0.51	-0.2
4,330,019	+		MIT1002_03865	0.55	-0.5
4,330,073	-		MIT1002_03865	0.61	-0.1
4,330,073	-		MIT1002_03865	0.61	-0.8
4,330,129	-		MIT1002_03865	0.67	+0.5
4,330,148	+		MIT1002_03865	0.69	-0.6
4,330,175	-		MIT1002_03865	0.72	+1.7
4,330,189	+		MIT1002_03865	0.74	-0.8
4,330,215	+		MIT1002_03865	0.77	+0.4
4,330,224	-		MIT1002_03865	0.78	+0.4
4,330,224	-		MIT1002_03865	0.78	-0.5
4,330,269	+		MIT1002_03865	0.83	-0.3
4,330,295	+		MIT1002_03865	0.86	-0.6
4,330,303	-		MIT1002_03865	0.87	-1.0
4,330,308	-		MIT1002_03865	0.87	+0.2
4,330,405	-				-0.2
4,330,446	-				-0.2