Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03858

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
4,321,009	+		MIT1002_03857	0.33	-0.7
4,321,011	-		MIT1002_03857	0.34	-2.0
4,321,028	-		MIT1002_03857	0.35	-0.5
4,321,068	-		MIT1002_03857	0.38	-1.0
4,321,095	-		MIT1002_03857	0.40	+0.1
4,321,095	-		MIT1002_03857	0.40	-1.9
4,321,176	+		MIT1002_03857	0.45	-2.9
4,321,179	-		MIT1002_03857	0.46	-0.1
4,321,198	-		MIT1002_03857	0.47	+1.0
4,321,271	+		MIT1002_03857	0.52	+0.7
4,321,271	+		MIT1002_03857	0.52	-1.0
4,321,271	+		MIT1002_03857	0.52	+0.7
4,321,296	+		MIT1002_03857	0.54	+0.0
4,321,301	+		MIT1002_03857	0.54	+0.0
4,321,301	+		MIT1002_03857	0.54	-0.8
4,321,304	-		MIT1002_03857	0.55	+1.5
4,321,486	-		MIT1002_03857	0.68	+0.8
4,321,509	-		MIT1002_03857	0.69	+0.0
4,321,532	-		MIT1002_03857	0.71	+1.2
4,321,536	+		MIT1002_03857	0.71	+0.6
4,321,544	-		MIT1002_03857	0.72	-0.3
4,321,544	-		MIT1002_03857	0.72	-0.7
4,321,641	-		MIT1002_03857	0.79	-0.5
4,321,692	-		MIT1002_03857	0.82	-3.1
4,321,749	+		MIT1002_03857	0.86	-0.6
4,321,774	+		MIT1002_03857	0.88	-0.8
4,321,804	+				-1.1
4,321,839	+				-1.0
4,321,847	-				-0.7
4,321,887	-				-1.3
4,321,908	+				-1.1
4,321,923	-				+0.0
4,322,009	+				-0.2
4,322,085	-				-0.3
4,322,152	+				-1.0
4,322,152	+				-1.4
4,322,153	+				+1.5
4,322,160	-				+1.3
4,322,160	-				-0.0
4,322,161	-				+1.3
4,322,216	+				-0.1
4,322,216	+				-1.7
4,322,216	+				-0.4
4,322,216	+				-1.4
4,322,216	+				+0.2
4,322,224	-		MIT1002_03858	0.10	-2.3
4,322,243	+		MIT1002_03858	0.11	+2.4
4,322,249	+		MIT1002_03858	0.11	-0.4
4,322,251	-		MIT1002_03858	0.11	+0.4
4,322,262	-		MIT1002_03858	0.12	-0.9
4,322,301	+		MIT1002_03858	0.13	-1.2
4,322,341	+		MIT1002_03858	0.15	-0.3
4,322,348	-		MIT1002_03858	0.15	-0.4
4,322,414	-		MIT1002_03858	0.18	+1.3
4,322,438	+		MIT1002_03858	0.19	-0.7
4,322,438	+		MIT1002_03858	0.19	-0.9
4,322,446	-		MIT1002_03858	0.19	-1.0
4,322,456	+		MIT1002_03858	0.20	+0.9
4,322,458	+		MIT1002_03858	0.20	-1.7
4,322,468	+		MIT1002_03858	0.20	-0.8
4,322,468	+		MIT1002_03858	0.20	-1.1
4,322,518	-		MIT1002_03858	0.22	-1.6
4,322,684	-		MIT1002_03858	0.29	-3.0
4,322,737	+		MIT1002_03858	0.31	-0.9
4,322,744	+		MIT1002_03858	0.32	+0.6
4,322,754	-		MIT1002_03858	0.32	-1.3
4,322,799	-		MIT1002_03858	0.34	-0.3
4,322,805	+		MIT1002_03858	0.34	-2.8
4,322,893	-		MIT1002_03858	0.38	-1.1
4,322,963	-		MIT1002_03858	0.41	-0.2
4,322,965	+		MIT1002_03858	0.41	-0.8
4,322,965	+		MIT1002_03858	0.41	+0.9
4,323,079	+		MIT1002_03858	0.46	-1.5
4,323,153	+		MIT1002_03858	0.49	-0.2
4,323,159	+		MIT1002_03858	0.49	-0.9
4,323,161	-		MIT1002_03858	0.49	-0.6
4,323,162	-		MIT1002_03858	0.49	+0.7
4,323,167	+		MIT1002_03858	0.49	-1.5
4,323,222	-		MIT1002_03858	0.52	-0.7
4,323,379	-		MIT1002_03858	0.58	-0.0
4,323,381	-		MIT1002_03858	0.58	-1.3
4,323,403	+		MIT1002_03858	0.59	+0.4
4,323,427	-		MIT1002_03858	0.60	+0.2
4,323,455	+		MIT1002_03858	0.61	+0.1
4,323,461	-		MIT1002_03858	0.62	-0.7
4,323,501	-		MIT1002_03858	0.63	-1.3
4,323,580	-		MIT1002_03858	0.66	-0.3
4,323,592	+		MIT1002_03858	0.67	+0.3
4,323,600	-		MIT1002_03858	0.67	-1.1
4,323,600	-		MIT1002_03858	0.67	-1.1
4,323,681	+		MIT1002_03858	0.71	-0.2
4,323,688	-		MIT1002_03858	0.71	-0.4
4,323,777	+		MIT1002_03858	0.75	-0.4
4,323,811	-		MIT1002_03858	0.76	-0.3
4,323,840	-		MIT1002_03858	0.77	+0.7
4,323,840	-		MIT1002_03858	0.77	-0.5
4,323,840	-		MIT1002_03858	0.77	+0.7
4,323,882	-		MIT1002_03858	0.79	-0.3
4,323,945	+		MIT1002_03858	0.82	+0.9
4,323,953	-		MIT1002_03858	0.82	-1.2
4,323,998	+		MIT1002_03858	0.84	-1.0
4,324,011	+		MIT1002_03858	0.84	+0.9
4,324,038	+		MIT1002_03858	0.85	-0.1
4,324,038	+		MIT1002_03858	0.85	+0.1
4,324,046	-		MIT1002_03858	0.86	-0.3
4,324,213	+				-0.7
4,324,305	+				-1.7
4,324,329	+				-0.3
4,324,337	-				-1.0
4,324,361	+				-0.2
4,324,361	+				-1.2
4,324,361	+				-0.3
4,324,361	+				+0.3
4,324,389	+				-0.5
4,324,631	+		MIT1002_03859	0.24	+0.6
4,324,638	-		MIT1002_03859	0.26	+0.9
4,324,827	+		MIT1002_03859	0.56	+0.1
4,324,860	+		MIT1002_03859	0.61	+1.7
4,324,866	+		MIT1002_03859	0.62	+2.5
4,324,904	+		MIT1002_03859	0.68	+0.7
4,324,905	+		MIT1002_03859	0.68	-0.6
4,324,905	+		MIT1002_03859	0.68	-1.7
4,324,946	+		MIT1002_03859	0.75	+0.2
4,324,977	+		MIT1002_03859	0.80	+1.9
4,325,048	+				-0.3
4,325,048	+				+0.2
4,325,056	-				-0.3
4,325,056	-				+1.2
4,325,063	-				+0.2
4,325,146	-				+1.1
4,325,204	-				+0.4
4,325,361	+		MIT1002_03860	0.35	+0.7