Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03841

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
4,300,468	-		MIT1002_03840	0.62	-1.4
4,300,484	-		MIT1002_03840	0.62	+0.8
4,300,509	+		MIT1002_03840	0.63	+0.2
4,300,556	+		MIT1002_03840	0.65	+0.1
4,300,585	-		MIT1002_03840	0.66	-2.0
4,300,585	-		MIT1002_03840	0.66	-0.2
4,300,585	-		MIT1002_03840	0.66	-0.2
4,300,585	-		MIT1002_03840	0.66	+0.6
4,300,591	+		MIT1002_03840	0.67	+0.5
4,300,672	-		MIT1002_03840	0.70	+0.4
4,300,686	+		MIT1002_03840	0.70	-2.0
4,300,725	+		MIT1002_03840	0.72	-0.4
4,300,750	+		MIT1002_03840	0.73	+0.0
4,300,750	+		MIT1002_03840	0.73	+0.5
4,300,758	-		MIT1002_03840	0.73	-0.3
4,300,758	-		MIT1002_03840	0.73	+0.3
4,300,813	+		MIT1002_03840	0.75	+0.0
4,300,846	-		MIT1002_03840	0.77	-0.1
4,300,894	+		MIT1002_03840	0.79	-0.0
4,300,922	+		MIT1002_03840	0.80	-0.5
4,300,922	+		MIT1002_03840	0.80	-0.3
4,300,930	-		MIT1002_03840	0.80	-0.3
4,300,930	-		MIT1002_03840	0.80	+0.8
4,300,930	-		MIT1002_03840	0.80	-0.9
4,300,930	-		MIT1002_03840	0.80	+0.4
4,300,992	+		MIT1002_03840	0.82	+0.3
4,301,000	-		MIT1002_03840	0.83	+0.9
4,301,008	+		MIT1002_03840	0.83	-0.5
4,301,016	-		MIT1002_03840	0.83	+1.3
4,301,046	-		MIT1002_03840	0.84	-0.5
4,301,081	+		MIT1002_03840	0.86	+0.8
4,301,089	-		MIT1002_03840	0.86	-0.6
4,301,091	+		MIT1002_03840	0.86	+0.8
4,301,091	+		MIT1002_03840	0.86	+0.7
4,301,099	-		MIT1002_03840	0.87	-0.1
4,301,099	-		MIT1002_03840	0.87	+1.0
4,301,230	+				+0.8
4,301,305	+				-0.1
4,301,307	-				-0.7
4,301,343	+				+0.3
4,301,407	-				-1.4
4,301,459	+				+1.5
4,301,467	+				+0.4
4,301,520	-				+1.0
4,301,520	-				-0.8
4,301,521	-				+1.4
4,301,557	-				-0.2
4,301,571	-				+1.7
4,301,596	-		MIT1002_03841	0.11	-0.0
4,301,599	-		MIT1002_03841	0.11	+0.6
4,301,635	-		MIT1002_03841	0.14	+0.8
4,301,644	-		MIT1002_03841	0.15	+1.8
4,301,644	-		MIT1002_03841	0.15	+0.1
4,301,661	+		MIT1002_03841	0.16	-1.3
4,301,680	-		MIT1002_03841	0.18	+0.4
4,301,711	-		MIT1002_03841	0.20	+0.5
4,301,730	-		MIT1002_03841	0.22	+0.4
4,301,801	+		MIT1002_03841	0.27	-0.2
4,301,874	-		MIT1002_03841	0.33	-1.1
4,301,874	-		MIT1002_03841	0.33	+0.4
4,301,912	-		MIT1002_03841	0.36	+0.4
4,301,932	+		MIT1002_03841	0.38	-0.0
4,301,981	-		MIT1002_03841	0.42	+0.4
4,302,015	-		MIT1002_03841	0.44	-0.8
4,302,039	-		MIT1002_03841	0.46	+0.4
4,302,065	-		MIT1002_03841	0.48	+0.8
4,302,085	-		MIT1002_03841	0.50	-1.0
4,302,154	-		MIT1002_03841	0.55	-1.9
4,302,177	-		MIT1002_03841	0.57	-0.3
4,302,179	+		MIT1002_03841	0.57	+0.8
4,302,185	-		MIT1002_03841	0.58	-1.6
4,302,218	-		MIT1002_03841	0.60	+0.6
4,302,277	+		MIT1002_03841	0.65	-0.9
4,302,277	+		MIT1002_03841	0.65	-0.3
4,302,285	-		MIT1002_03841	0.66	+0.4
4,302,308	+		MIT1002_03841	0.68	-0.4
4,302,308	+		MIT1002_03841	0.68	+0.1
4,302,309	-		MIT1002_03841	0.68	+0.7
4,302,326	-		MIT1002_03841	0.69	+0.3
4,302,338	-		MIT1002_03841	0.70	-0.2
4,302,423	+		MIT1002_03841	0.77	+1.0
4,302,423	+		MIT1002_03841	0.77	+0.9
4,302,423	+		MIT1002_03841	0.77	-0.0
4,302,424	+		MIT1002_03841	0.77	+0.8
4,302,426	-		MIT1002_03841	0.77	-0.1
4,302,440	+		MIT1002_03841	0.78	+1.9
4,302,440	+		MIT1002_03841	0.78	+0.0
4,302,453	-		MIT1002_03841	0.79	+0.1
4,302,497	-		MIT1002_03841	0.83	+0.2
4,302,629	-				+0.3
4,302,644	+				-0.1
4,302,668	+				+0.8
4,302,699	-				-0.0
4,302,701	+				-1.5
4,302,701	+				-0.2
4,302,701	+				-0.5
4,302,701	+				+1.2
4,302,706	+				+0.5
4,302,709	-				-2.5
4,302,860	+				+1.1
4,302,868	-				-0.3
4,302,870	+				-0.8
4,302,870	+				-0.1
4,302,870	+				+1.0
4,302,870	+				+0.7
4,302,878	-				-1.7
4,302,878	-				-0.3
4,302,878	-				-0.2
4,302,904	+				+0.9
4,303,096	+		MIT1002_03842	0.13	+0.1
4,303,096	+		MIT1002_03842	0.13	+0.2
4,303,135	-		MIT1002_03842	0.16	+0.1
4,303,159	-		MIT1002_03842	0.17	-1.3
4,303,160	+		MIT1002_03842	0.18	+0.2
4,303,160	+		MIT1002_03842	0.18	+0.4
4,303,168	-		MIT1002_03842	0.18	+0.2
4,303,168	-		MIT1002_03842	0.18	-0.1
4,303,170	+		MIT1002_03842	0.18	-0.2
4,303,170	+		MIT1002_03842	0.18	+0.4
4,303,178	-		MIT1002_03842	0.19	-1.4
4,303,178	-		MIT1002_03842	0.19	-0.5
4,303,178	-		MIT1002_03842	0.19	-1.4
4,303,268	+		MIT1002_03842	0.25	-0.3
4,303,276	-		MIT1002_03842	0.26	+0.4
4,303,296	+		MIT1002_03842	0.28	+0.2
4,303,313	+		MIT1002_03842	0.29	+0.1
4,303,418	-		MIT1002_03842	0.36	-0.9
4,303,429	-		MIT1002_03842	0.37	-0.9
4,303,434	+		MIT1002_03842	0.38	+0.3
4,303,466	+		MIT1002_03842	0.40	+0.4
4,303,477	+		MIT1002_03842	0.41	-0.6
4,303,501	+		MIT1002_03842	0.43	-1.1
4,303,546	-		MIT1002_03842	0.46	-0.2
4,303,594	-		MIT1002_03842	0.49	+0.3
4,303,599	-		MIT1002_03842	0.50	+0.9
4,303,636	+		MIT1002_03842	0.53	-0.3
4,303,644	-		MIT1002_03842	0.53	-0.1
4,303,644	-		MIT1002_03842	0.53	-0.6
4,303,644	-		MIT1002_03842	0.53	+0.1
4,303,682	+		MIT1002_03842	0.56	+0.8