Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03811

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
4,255,287	-				-1.1
4,255,388	+				+1.1
4,255,407	-				+0.2
4,255,412	-				+0.4
4,255,416	+				+0.7
4,255,439	+				+0.7
4,255,609	+				+0.6
4,255,655	-				-0.4
4,255,666	-		MIT1002_03810	0.11	-1.3
4,255,666	-		MIT1002_03810	0.11	-0.0
4,255,721	+		MIT1002_03810	0.19	-0.1
4,255,726	+		MIT1002_03810	0.20	-0.1
4,255,726	+		MIT1002_03810	0.20	-0.4
4,255,734	-		MIT1002_03810	0.21	-1.8
4,255,747	+		MIT1002_03810	0.23	+0.4
4,255,752	+		MIT1002_03810	0.24	+0.4
4,255,755	-		MIT1002_03810	0.24	-0.3
4,255,755	-		MIT1002_03810	0.24	-0.5
4,255,755	-		MIT1002_03810	0.24	-0.3
4,255,817	+		MIT1002_03810	0.33	+2.7
4,255,845	-		MIT1002_03810	0.37	+0.1
4,255,860	-		MIT1002_03810	0.40	+0.8
4,255,878	+		MIT1002_03810	0.42	-0.3
4,255,878	+		MIT1002_03810	0.42	-0.1
4,255,878	+		MIT1002_03810	0.42	-0.7
4,256,014	+		MIT1002_03810	0.62	-0.4
4,256,046	-		MIT1002_03810	0.67	-0.5
4,256,144	+		MIT1002_03810	0.81	+0.3
4,256,188	+		MIT1002_03810	0.87	+1.5
4,256,196	-		MIT1002_03810	0.88	-0.4
4,256,210	+				-0.8
4,256,229	+				-1.9
4,256,235	-				+0.3
4,256,262	-				+0.2
4,256,277	+				-0.5
4,256,352	-				+0.2
4,256,415	-				+0.2
4,256,456	+		MIT1002_03811	0.13	-1.6
4,256,701	-		MIT1002_03811	0.30	-0.7
4,256,714	-		MIT1002_03811	0.31	+0.8
4,256,727	+		MIT1002_03811	0.32	+0.5
4,256,750	+		MIT1002_03811	0.33	-2.7
4,256,775	+		MIT1002_03811	0.35	+0.5
4,256,775	+		MIT1002_03811	0.35	+1.7
4,256,785	+		MIT1002_03811	0.36	+0.7
4,256,916	+		MIT1002_03811	0.45	+0.5
4,256,916	-		MIT1002_03811	0.45	-0.3
4,257,002	+		MIT1002_03811	0.51	+0.7
4,257,010	-		MIT1002_03811	0.52	+0.5
4,257,048	-		MIT1002_03811	0.54	+0.2
4,257,084	-		MIT1002_03811	0.57	+1.4
4,257,116	+		MIT1002_03811	0.59	-0.1
4,257,116	+		MIT1002_03811	0.59	+1.0
4,257,116	+		MIT1002_03811	0.59	-0.1
4,257,116	+		MIT1002_03811	0.59	-1.9
4,257,124	-		MIT1002_03811	0.59	+1.0
4,257,124	-		MIT1002_03811	0.59	+0.2
4,257,124	-		MIT1002_03811	0.59	-0.9
4,257,124	-		MIT1002_03811	0.59	-1.4
4,257,124	-		MIT1002_03811	0.59	-0.7
4,257,124	-		MIT1002_03811	0.59	+0.8
4,257,131	-		MIT1002_03811	0.60	-2.0
4,257,133	+		MIT1002_03811	0.60	-0.1
4,257,133	+		MIT1002_03811	0.60	+0.8
4,257,141	-		MIT1002_03811	0.61	+1.7
4,257,152	+		MIT1002_03811	0.61	+0.4
4,257,168	+		MIT1002_03811	0.63	+1.0
4,257,185	-		MIT1002_03811	0.64	+0.8
4,257,235	-		MIT1002_03811	0.67	+1.4
4,257,336	+		MIT1002_03811	0.74	+0.7
4,257,336	-		MIT1002_03811	0.74	-0.3
4,257,349	-		MIT1002_03811	0.75	+0.4
4,257,357	+		MIT1002_03811	0.76	+0.1
4,257,357	+		MIT1002_03811	0.76	-0.3
4,257,362	+		MIT1002_03811	0.76	+1.3
4,257,365	-		MIT1002_03811	0.76	+0.4
4,257,462	+		MIT1002_03811	0.83	+0.3
4,257,523	-		MIT1002_03811	0.87	-0.4
4,257,528	+		MIT1002_03811	0.88	-0.5
4,257,529	-		MIT1002_03811	0.88	+0.4
4,257,557	+		MIT1002_03811	0.90	+0.2
4,257,598	+				-1.5
4,257,601	-				-0.2
4,257,601	-				+0.8
4,257,601	-				-0.4
4,257,606	-				+0.6
4,257,618	+				+1.9
4,257,647	+				-0.6
4,257,655	-				-1.3
4,257,655	-				-1.1
4,257,655	-				+0.0
4,257,660	+				-0.1
4,257,660	+				-1.0
4,257,668	-				+0.9
4,257,668	-				+0.3
4,257,678	-				+0.6
4,257,723	-				-0.1
4,257,725	+				+0.4
4,257,740	+				+0.1
4,257,762	+				+0.9
4,257,762	+				+0.9
4,257,767	+				+0.3
4,257,772	+				-1.0
4,257,772	+				-0.1
4,257,777	+				+0.1
4,257,785	-				+1.1
4,257,785	-				+2.2
4,257,785	-				-0.6
4,257,806	-		MIT1002_03812	0.11	-0.3
4,257,829	+		MIT1002_03812	0.13	-1.7
4,257,829	+		MIT1002_03812	0.13	+0.9
4,257,829	+		MIT1002_03812	0.13	-1.1
4,257,837	-		MIT1002_03812	0.14	+1.1
4,257,844	+		MIT1002_03812	0.14	-0.2
4,257,844	+		MIT1002_03812	0.14	-1.1
4,257,869	+		MIT1002_03812	0.17	-1.6
4,257,871	+		MIT1002_03812	0.17	+1.7
4,257,923	-		MIT1002_03812	0.21	-0.3
4,258,162	+		MIT1002_03812	0.43	+1.0
4,258,180	-		MIT1002_03812	0.44	-0.9
4,258,180	-		MIT1002_03812	0.44	-0.0
4,258,253	+		MIT1002_03812	0.51	-0.5
4,258,253	+		MIT1002_03812	0.51	+1.7
4,258,322	+		MIT1002_03812	0.57	-1.7
4,258,344	-		MIT1002_03812	0.59	-0.1
4,258,495	+		MIT1002_03812	0.72	-0.4
4,258,495	+		MIT1002_03812	0.72	-0.3
4,258,503	-		MIT1002_03812	0.73	+0.3
4,258,503	-		MIT1002_03812	0.73	-0.3
4,258,518	+		MIT1002_03812	0.74	-0.3
4,258,549	-		MIT1002_03812	0.77	+0.6
4,258,615	-		MIT1002_03812	0.83	+0.7
4,258,628	-		MIT1002_03812	0.84	-0.3