Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03688 and MIT1002_03689 are separated by 202 nucleotides MIT1002_03689 and MIT1002_03690 are separated by 239 nucleotides MIT1002_03690 and MIT1002_03691 are separated by 73 nucleotides
MIT1002_03688: MIT1002_03688 - Peptidase B, at 4,119,305 to 4,120,588
_03688
MIT1002_03689: MIT1002_03689 - Sugar fermentation stimulation protein A, at 4,120,791 to 4,121,507
_03689
MIT1002_03690: MIT1002_03690 - DnaK suppressor protein, at 4,121,747 to 4,122,196
_03690
MIT1002_03691: MIT1002_03691 - Glutamyl-Q tRNA(Asp) synthetase, at 4,122,270 to 4,123,193
_03691
Position (kb) 4120
4121
4122 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 4119.814 kb on - strand, within MIT1002_03688 at 4119.839 kb on - strand, within MIT1002_03688 at 4119.848 kb on + strand, within MIT1002_03688 at 4119.848 kb on - strand, within MIT1002_03688 at 4119.860 kb on + strand, within MIT1002_03688 at 4119.868 kb on - strand, within MIT1002_03688 at 4119.868 kb on - strand, within MIT1002_03688 at 4119.976 kb on + strand, within MIT1002_03688 at 4119.984 kb on - strand, within MIT1002_03688 at 4119.991 kb on - strand, within MIT1002_03688 at 4119.998 kb on + strand, within MIT1002_03688 at 4120.056 kb on + strand, within MIT1002_03688 at 4120.130 kb on + strand, within MIT1002_03688 at 4120.133 kb on - strand, within MIT1002_03688 at 4120.133 kb on - strand, within MIT1002_03688 at 4120.146 kb on - strand, within MIT1002_03688 at 4120.199 kb on + strand, within MIT1002_03688 at 4120.200 kb on - strand, within MIT1002_03688 at 4120.207 kb on - strand, within MIT1002_03688 at 4120.232 kb on + strand, within MIT1002_03688 at 4120.349 kb on - strand, within MIT1002_03688 at 4120.387 kb on - strand, within MIT1002_03688 at 4120.408 kb on + strand, within MIT1002_03688 at 4120.408 kb on + strand, within MIT1002_03688 at 4120.416 kb on - strand, within MIT1002_03688 at 4120.416 kb on - strand, within MIT1002_03688 at 4120.423 kb on + strand, within MIT1002_03688 at 4120.423 kb on + strand, within MIT1002_03688 at 4120.423 kb on + strand, within MIT1002_03688 at 4120.431 kb on - strand, within MIT1002_03688 at 4120.473 kb on + strand at 4120.476 kb on - strand at 4120.498 kb on - strand at 4120.530 kb on - strand at 4120.530 kb on - strand at 4120.543 kb on - strand at 4120.549 kb on - strand at 4120.705 kb on + strand at 4120.705 kb on + strand at 4120.705 kb on + strand at 4120.713 kb on - strand at 4120.713 kb on - strand at 4120.713 kb on - strand at 4120.713 kb on - strand at 4120.713 kb on - strand at 4120.717 kb on - strand at 4120.937 kb on - strand, within MIT1002_03689 at 4120.990 kb on - strand, within MIT1002_03689 at 4120.992 kb on - strand, within MIT1002_03689 at 4121.188 kb on + strand, within MIT1002_03689 at 4121.207 kb on + strand, within MIT1002_03689 at 4121.241 kb on + strand, within MIT1002_03689 at 4121.251 kb on - strand, within MIT1002_03689 at 4121.282 kb on - strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.284 kb on + strand, within MIT1002_03689 at 4121.292 kb on - strand, within MIT1002_03689 at 4121.292 kb on - strand, within MIT1002_03689 at 4121.292 kb on - strand, within MIT1002_03689 at 4121.292 kb on - strand, within MIT1002_03689 at 4121.328 kb on + strand, within MIT1002_03689 at 4121.328 kb on + strand, within MIT1002_03689 at 4121.336 kb on - strand, within MIT1002_03689 at 4121.336 kb on - strand, within MIT1002_03689 at 4121.338 kb on + strand, within MIT1002_03689 at 4121.338 kb on + strand, within MIT1002_03689 at 4121.346 kb on - strand, within MIT1002_03689 at 4121.348 kb on - strand, within MIT1002_03689 at 4121.350 kb on + strand, within MIT1002_03689 at 4121.422 kb on + strand, within MIT1002_03689 at 4121.710 kb on + strand at 4121.710 kb on + strand at 4121.718 kb on - strand at 4121.729 kb on + strand at 4121.729 kb on + strand at 4121.737 kb on - strand at 4121.737 kb on - strand at 4121.780 kb on - strand at 4121.796 kb on + strand, within MIT1002_03690 at 4121.804 kb on - strand, within MIT1002_03690 at 4121.828 kb on + strand, within MIT1002_03690 at 4121.830 kb on + strand, within MIT1002_03690 at 4121.830 kb on + strand, within MIT1002_03690 at 4121.830 kb on + strand, within MIT1002_03690 at 4121.836 kb on - strand, within MIT1002_03690 at 4121.838 kb on - strand, within MIT1002_03690 at 4121.838 kb on - strand, within MIT1002_03690 at 4121.847 kb on + strand, within MIT1002_03690 at 4121.852 kb on + strand, within MIT1002_03690 at 4121.866 kb on + strand, within MIT1002_03690 at 4121.869 kb on + strand, within MIT1002_03690 at 4121.869 kb on + strand, within MIT1002_03690 at 4121.877 kb on - strand, within MIT1002_03690 at 4121.877 kb on - strand, within MIT1002_03690 at 4121.908 kb on + strand, within MIT1002_03690 at 4121.908 kb on - strand, within MIT1002_03690 at 4121.913 kb on + strand, within MIT1002_03690 at 4121.931 kb on - strand, within MIT1002_03690 at 4121.931 kb on - strand, within MIT1002_03690 at 4121.954 kb on + strand, within MIT1002_03690 at 4121.954 kb on + strand, within MIT1002_03690 at 4121.962 kb on - strand, within MIT1002_03690 at 4121.962 kb on - strand, within MIT1002_03690 at 4121.962 kb on - strand, within MIT1002_03690 at 4121.988 kb on + strand, within MIT1002_03690 at 4121.991 kb on - strand, within MIT1002_03690 at 4121.996 kb on - strand, within MIT1002_03690 at 4121.998 kb on + strand, within MIT1002_03690 at 4122.006 kb on - strand, within MIT1002_03690 at 4122.006 kb on - strand, within MIT1002_03690 at 4122.157 kb on + strand at 4122.159 kb on - strand at 4122.198 kb on - strand at 4122.216 kb on - strand at 4122.228 kb on + strand at 4122.278 kb on + strand at 4122.286 kb on - strand at 4122.286 kb on - strand at 4122.293 kb on - strand at 4122.310 kb on - strand at 4122.371 kb on - strand, within MIT1002_03691 at 4122.421 kb on + strand, within MIT1002_03691 at 4122.421 kb on + strand, within MIT1002_03691 at 4122.421 kb on + strand, within MIT1002_03691 at 4122.421 kb on + strand, within MIT1002_03691 at 4122.421 kb on + strand, within MIT1002_03691 at 4122.430 kb on - strand, within MIT1002_03691 at 4122.435 kb on + strand, within MIT1002_03691 at 4122.437 kb on - strand, within MIT1002_03691 at 4122.437 kb on - strand, within MIT1002_03691 at 4122.443 kb on - strand, within MIT1002_03691 at 4122.449 kb on - strand, within MIT1002_03691 at 4122.473 kb on + strand, within MIT1002_03691 at 4122.473 kb on + strand, within MIT1002_03691
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 4,119,814 - MIT1002_03688 0.40 +2.0 4,119,839 - MIT1002_03688 0.42 -0.2 4,119,848 + MIT1002_03688 0.42 +0.1 4,119,848 - MIT1002_03688 0.42 -0.1 4,119,860 + MIT1002_03688 0.43 -0.6 4,119,868 - MIT1002_03688 0.44 -0.4 4,119,868 - MIT1002_03688 0.44 -0.6 4,119,976 + MIT1002_03688 0.52 -0.4 4,119,984 - MIT1002_03688 0.53 -0.6 4,119,991 - MIT1002_03688 0.53 +2.4 4,119,998 + MIT1002_03688 0.54 +0.8 4,120,056 + MIT1002_03688 0.58 +0.2 4,120,130 + MIT1002_03688 0.64 -0.0 4,120,133 - MIT1002_03688 0.64 -0.9 4,120,133 - MIT1002_03688 0.64 -1.5 4,120,146 - MIT1002_03688 0.65 +1.1 4,120,199 + MIT1002_03688 0.70 +0.8 4,120,200 - MIT1002_03688 0.70 +0.2 4,120,207 - MIT1002_03688 0.70 -0.5 4,120,232 + MIT1002_03688 0.72 +0.1 4,120,349 - MIT1002_03688 0.81 -1.0 4,120,387 - MIT1002_03688 0.84 -0.8 4,120,408 + MIT1002_03688 0.86 -0.6 4,120,408 + MIT1002_03688 0.86 -1.4 4,120,416 - MIT1002_03688 0.87 +0.3 4,120,416 - MIT1002_03688 0.87 -1.2 4,120,423 + MIT1002_03688 0.87 +0.3 4,120,423 + MIT1002_03688 0.87 -0.0 4,120,423 + MIT1002_03688 0.87 +0.0 4,120,431 - MIT1002_03688 0.88 +0.1 4,120,473 + +0.6 4,120,476 - +0.5 4,120,498 - +0.0 4,120,530 - +0.7 4,120,530 - -0.3 4,120,543 - +1.5 4,120,549 - +0.7 4,120,705 + -0.4 4,120,705 + +0.1 4,120,705 + +0.0 4,120,713 - +1.1 4,120,713 - -0.2 4,120,713 - -0.9 4,120,713 - -0.3 4,120,713 - +0.2 4,120,717 - +0.0 4,120,937 - MIT1002_03689 0.20 -0.3 4,120,990 - MIT1002_03689 0.28 -0.4 4,120,992 - MIT1002_03689 0.28 -1.3 4,121,188 + MIT1002_03689 0.55 +1.0 4,121,207 + MIT1002_03689 0.58 -0.1 4,121,241 + MIT1002_03689 0.63 +0.3 4,121,251 - MIT1002_03689 0.64 -1.1 4,121,282 - MIT1002_03689 0.68 -0.3 4,121,284 + MIT1002_03689 0.69 +1.2 4,121,284 + MIT1002_03689 0.69 +1.1 4,121,284 + MIT1002_03689 0.69 +0.1 4,121,284 + MIT1002_03689 0.69 -0.7 4,121,284 + MIT1002_03689 0.69 +0.5 4,121,284 + MIT1002_03689 0.69 +0.9 4,121,284 + MIT1002_03689 0.69 -0.3 4,121,284 + MIT1002_03689 0.69 +0.3 4,121,292 - MIT1002_03689 0.70 +0.3 4,121,292 - MIT1002_03689 0.70 +1.2 4,121,292 - MIT1002_03689 0.70 -1.8 4,121,292 - MIT1002_03689 0.70 +0.6 4,121,328 + MIT1002_03689 0.75 +0.3 4,121,328 + MIT1002_03689 0.75 -1.4 4,121,336 - MIT1002_03689 0.76 +0.1 4,121,336 - MIT1002_03689 0.76 +0.3 4,121,338 + MIT1002_03689 0.76 -0.3 4,121,338 + MIT1002_03689 0.76 +0.8 4,121,346 - MIT1002_03689 0.77 -1.3 4,121,348 - MIT1002_03689 0.78 -1.1 4,121,350 + MIT1002_03689 0.78 +0.0 4,121,422 + MIT1002_03689 0.88 -0.8 4,121,710 + +0.7 4,121,710 + +0.5 4,121,718 - -3.2 4,121,729 + +0.4 4,121,729 + +0.5 4,121,737 - -2.7 4,121,737 - -2.5 4,121,780 - -1.1 4,121,796 + MIT1002_03690 0.11 -0.9 4,121,804 - MIT1002_03690 0.13 -5.8 4,121,828 + MIT1002_03690 0.18 -1.6 4,121,830 + MIT1002_03690 0.18 -5.6 4,121,830 + MIT1002_03690 0.18 -3.6 4,121,830 + MIT1002_03690 0.18 -2.8 4,121,836 - MIT1002_03690 0.20 -5.0 4,121,838 - MIT1002_03690 0.20 -3.5 4,121,838 - MIT1002_03690 0.20 -3.1 4,121,847 + MIT1002_03690 0.22 -4.9 4,121,852 + MIT1002_03690 0.23 -4.5 4,121,866 + MIT1002_03690 0.26 -6.2 4,121,869 + MIT1002_03690 0.27 -1.6 4,121,869 + MIT1002_03690 0.27 -6.0 4,121,877 - MIT1002_03690 0.29 -3.2 4,121,877 - MIT1002_03690 0.29 -6.1 4,121,908 + MIT1002_03690 0.36 -3.6 4,121,908 - MIT1002_03690 0.36 -4.5 4,121,913 + MIT1002_03690 0.37 -3.7 4,121,931 - MIT1002_03690 0.41 -2.8 4,121,931 - MIT1002_03690 0.41 -3.5 4,121,954 + MIT1002_03690 0.46 -6.0 4,121,954 + MIT1002_03690 0.46 -3.6 4,121,962 - MIT1002_03690 0.48 -4.6 4,121,962 - MIT1002_03690 0.48 -5.1 4,121,962 - MIT1002_03690 0.48 -4.4 4,121,988 + MIT1002_03690 0.54 -2.3 4,121,991 - MIT1002_03690 0.54 -5.3 4,121,996 - MIT1002_03690 0.55 -3.0 4,121,998 + MIT1002_03690 0.56 -5.0 4,122,006 - MIT1002_03690 0.58 -6.4 4,122,006 - MIT1002_03690 0.58 -4.7 4,122,157 + -4.9 4,122,159 - -3.7 4,122,198 - +0.9 4,122,216 - +0.3 4,122,228 + -1.2 4,122,278 + -1.2 4,122,286 - +1.3 4,122,286 - -0.7 4,122,293 - +0.8 4,122,310 - +0.7 4,122,371 - MIT1002_03691 0.11 -0.1 4,122,421 + MIT1002_03691 0.16 +0.2 4,122,421 + MIT1002_03691 0.16 +0.4 4,122,421 + MIT1002_03691 0.16 -0.8 4,122,421 + MIT1002_03691 0.16 +0.7 4,122,421 + MIT1002_03691 0.16 -1.1 4,122,430 - MIT1002_03691 0.17 -1.9 4,122,435 + MIT1002_03691 0.18 -0.1 4,122,437 - MIT1002_03691 0.18 -1.6 4,122,437 - MIT1002_03691 0.18 +0.2 4,122,443 - MIT1002_03691 0.19 -0.8 4,122,449 - MIT1002_03691 0.19 +0.5 4,122,473 + MIT1002_03691 0.22 +1.1 4,122,473 + MIT1002_03691 0.22 +0.5
Or see this region's nucleotide sequence