Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02847

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
3,156,840	-		MIT1002_02845	0.62	+1.5
3,156,963	-		MIT1002_02845	0.74	+0.4
3,156,969	+		MIT1002_02845	0.74	+0.4
3,157,040	+		MIT1002_02845	0.81	-0.0
3,157,057	+		MIT1002_02845	0.83	-0.5
3,157,057	+		MIT1002_02845	0.83	-0.7
3,157,065	-		MIT1002_02845	0.84	+0.1
3,157,082	+		MIT1002_02845	0.85	+0.0
3,157,090	-		MIT1002_02845	0.86	+0.9
3,157,090	-		MIT1002_02845	0.86	-0.5
3,157,119	+		MIT1002_02845	0.89	-0.4
3,157,119	+		MIT1002_02845	0.89	-0.4
3,157,158	-				-0.1
3,157,258	-				-0.3
3,157,278	+				-2.3
3,157,402	+		MIT1002_02846	0.29	+0.4
3,157,466	-		MIT1002_02846	0.40	+0.4
3,157,469	+		MIT1002_02846	0.40	+0.0
3,157,477	-		MIT1002_02846	0.42	-1.5
3,157,536	-		MIT1002_02846	0.52	+0.7
3,157,544	+		MIT1002_02846	0.53	-0.7
3,157,544	+		MIT1002_02846	0.53	+0.7
3,157,549	-		MIT1002_02846	0.54	-1.0
3,157,552	-		MIT1002_02846	0.55	+0.0
3,157,552	-		MIT1002_02846	0.55	+1.1
3,157,552	-		MIT1002_02846	0.55	+0.3
3,157,570	+		MIT1002_02846	0.58	+1.1
3,157,617	+		MIT1002_02846	0.66	+0.9
3,157,690	-		MIT1002_02846	0.78	-0.1
3,157,776	-				-0.1
3,157,776	-				+0.8
3,157,856	-				+0.3
3,157,856	-				+0.0
3,157,875	+				+0.5
3,157,893	+				+1.3
3,157,898	+				+0.2
3,157,959	+		MIT1002_02847	0.12	+1.6
3,158,015	-		MIT1002_02847	0.17	-0.9
3,158,050	-		MIT1002_02847	0.19	+0.6
3,158,065	+		MIT1002_02847	0.21	+0.7
3,158,080	+		MIT1002_02847	0.22	-1.4
3,158,080	+		MIT1002_02847	0.22	+2.2
3,158,088	-		MIT1002_02847	0.23	+1.1
3,158,088	-		MIT1002_02847	0.23	+0.0
3,158,117	-		MIT1002_02847	0.25	-0.1
3,158,167	-		MIT1002_02847	0.29	+1.5
3,158,168	-		MIT1002_02847	0.29	+0.9
3,158,175	+		MIT1002_02847	0.30	+0.8
3,158,213	-		MIT1002_02847	0.33	+0.1
3,158,341	+		MIT1002_02847	0.43	-0.4
3,158,344	-		MIT1002_02847	0.44	+0.8
3,158,351	-		MIT1002_02847	0.44	-2.5
3,158,356	+		MIT1002_02847	0.45	+0.2
3,158,377	+		MIT1002_02847	0.46	-2.1
3,158,377	+		MIT1002_02847	0.46	+1.1
3,158,414	+		MIT1002_02847	0.49	+1.1
3,158,414	+		MIT1002_02847	0.49	+0.4
3,158,416	+		MIT1002_02847	0.50	-0.2
3,158,422	-		MIT1002_02847	0.50	+0.5
3,158,443	+		MIT1002_02847	0.52	+0.2
3,158,494	-		MIT1002_02847	0.56	+0.3
3,158,511	-		MIT1002_02847	0.57	-0.7
3,158,543	+		MIT1002_02847	0.60	+0.2
3,158,543	+		MIT1002_02847	0.60	-0.9
3,158,543	+		MIT1002_02847	0.60	-2.9
3,158,543	+		MIT1002_02847	0.60	-1.0
3,158,543	+		MIT1002_02847	0.60	-0.9
3,158,543	+		MIT1002_02847	0.60	+0.1
3,158,543	+		MIT1002_02847	0.60	+0.8
3,158,543	+		MIT1002_02847	0.60	+0.2
3,158,543	+		MIT1002_02847	0.60	+0.3
3,158,543	+		MIT1002_02847	0.60	+0.1
3,158,551	-		MIT1002_02847	0.61	-1.9
3,158,551	-		MIT1002_02847	0.61	+1.3
3,158,551	-		MIT1002_02847	0.61	+0.3
3,158,551	-		MIT1002_02847	0.61	+0.2
3,158,551	-		MIT1002_02847	0.61	-0.2
3,158,551	-		MIT1002_02847	0.61	+0.1
3,158,551	-		MIT1002_02847	0.61	+1.1
3,158,551	-		MIT1002_02847	0.61	-0.7
3,158,551	-		MIT1002_02847	0.61	+0.0
3,158,598	-		MIT1002_02847	0.65	-0.2
3,158,673	-		MIT1002_02847	0.71	+0.1
3,158,689	+		MIT1002_02847	0.72	+0.1
3,158,689	+		MIT1002_02847	0.72	-0.3
3,158,689	+		MIT1002_02847	0.72	+0.4
3,158,689	+		MIT1002_02847	0.72	-1.1
3,158,689	+		MIT1002_02847	0.72	+0.2
3,158,697	-		MIT1002_02847	0.73	+0.2
3,158,697	-		MIT1002_02847	0.73	+0.6
3,158,697	-		MIT1002_02847	0.73	+0.0
3,158,714	+		MIT1002_02847	0.74	-0.8
3,158,770	-		MIT1002_02847	0.79	-2.9
3,158,828	+		MIT1002_02847	0.84	-0.1
3,158,836	-		MIT1002_02847	0.84	-0.4
3,158,927	-				-1.3
3,158,986	-				+0.9
3,159,122	-				+0.1
3,159,150	+				+0.2
3,159,227	+				-0.8
3,159,234	-				+1.5
3,159,244	-				-0.5
3,159,284	+				+0.8
3,159,284	+				+0.7
3,159,284	+				+0.2
3,159,284	+				-0.2
3,159,292	-				-0.6
3,159,294	+				+0.9
3,159,299	+				+1.5
3,159,302	-				+0.9
3,159,302	-				-1.2
3,159,313	-				+0.0
3,159,349	+				+1.8
3,159,482	+		MIT1002_02848	0.11	-0.2
3,159,497	+		MIT1002_02848	0.11	+0.4
3,159,497	+		MIT1002_02848	0.11	+0.0
3,159,505	-		MIT1002_02848	0.11	+1.5
3,159,516	+		MIT1002_02848	0.12	+0.0
3,159,518	+		MIT1002_02848	0.12	-0.7
3,159,551	+		MIT1002_02848	0.13	+0.7
3,159,666	+		MIT1002_02848	0.18	+0.4
3,159,666	+		MIT1002_02848	0.18	-0.2
3,159,687	-		MIT1002_02848	0.19	-0.1
3,159,741	+		MIT1002_02848	0.21	+1.0
3,159,741	+		MIT1002_02848	0.21	+0.1
3,159,749	-		MIT1002_02848	0.21	-0.5
3,159,821	+		MIT1002_02848	0.24	+0.8
3,159,846	-		MIT1002_02848	0.25	-0.9
3,159,947	-		MIT1002_02848	0.29	-0.5
3,159,999	-		MIT1002_02848	0.31	-0.9
3,160,006	+		MIT1002_02848	0.31	+1.6