Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02509

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,797,205	+		MIT1002_02507	0.85	+0.6
2,797,212	+		MIT1002_02507	0.86	-0.4
2,797,213	-		MIT1002_02507	0.86	-0.3
2,797,213	-		MIT1002_02507	0.86	+0.8
2,797,260	+		MIT1002_02507	0.89	+1.8
2,797,332	-				-0.5
2,797,364	-				+0.5
2,797,370	-				-2.2
2,797,375	-				+0.7
2,797,393	+				+0.4
2,797,424	+				+1.0
2,797,469	-				-0.1
2,797,521	+				+0.7
2,797,541	+				-0.0
2,797,543	-				-1.9
2,797,571	-		MIT1002_02508	0.12	-0.5
2,797,571	-		MIT1002_02508	0.12	-0.0
2,797,575	+		MIT1002_02508	0.13	+1.1
2,797,583	-		MIT1002_02508	0.15	+1.1
2,797,583	-		MIT1002_02508	0.15	+0.6
2,797,605	-		MIT1002_02508	0.20	-0.9
2,797,626	-		MIT1002_02508	0.25	-1.6
2,797,646	-		MIT1002_02508	0.30	+1.1
2,797,648	+		MIT1002_02508	0.30	+0.6
2,797,714	-		MIT1002_02508	0.46	-0.8
2,797,715	+		MIT1002_02508	0.46	-0.3
2,797,814	-		MIT1002_02508	0.70	-0.4
2,797,822	+		MIT1002_02508	0.72	-1.1
2,797,843	+		MIT1002_02508	0.77	+0.1
2,797,860	+		MIT1002_02508	0.81	+0.7
2,797,913	+				-0.3
2,797,916	-				-1.0
2,797,949	+				-0.4
2,798,102	+				+0.4
2,798,136	+				+0.2
2,798,147	+				-0.8
2,798,154	+				+0.4
2,798,155	-				-0.4
2,798,155	-				+0.7
2,798,219	+				+0.3
2,798,250	+		MIT1002_02509	0.11	+0.8
2,798,251	-		MIT1002_02509	0.11	-0.3
2,798,294	+		MIT1002_02509	0.16	-2.1
2,798,294	+		MIT1002_02509	0.16	+0.5
2,798,353	+		MIT1002_02509	0.22	-0.8
2,798,361	-		MIT1002_02509	0.22	-0.0
2,798,361	-		MIT1002_02509	0.22	+1.2
2,798,361	-		MIT1002_02509	0.22	+1.4
2,798,363	-		MIT1002_02509	0.23	-0.1
2,798,418	-		MIT1002_02509	0.28	+0.0
2,798,439	+		MIT1002_02509	0.30	+1.8
2,798,439	-		MIT1002_02509	0.30	+0.4
2,798,509	+		MIT1002_02509	0.37	-1.1
2,798,527	-		MIT1002_02509	0.39	-0.1
2,798,552	-		MIT1002_02509	0.42	-2.6
2,798,553	+		MIT1002_02509	0.42	+2.3
2,798,622	+		MIT1002_02509	0.49	-0.3
2,798,678	-		MIT1002_02509	0.54	+0.7
2,798,704	-		MIT1002_02509	0.57	-0.1
2,798,741	-		MIT1002_02509	0.61	+0.7
2,798,842	+		MIT1002_02509	0.71	-1.7
2,798,860	-		MIT1002_02509	0.73	+0.5
2,798,917	+		MIT1002_02509	0.79	+0.0
2,798,965	+		MIT1002_02509	0.83	+0.4
2,798,965	+		MIT1002_02509	0.83	+0.6
2,799,107	-				-0.3
2,799,122	+				+0.2
2,799,130	-				-0.4
2,799,130	-				-0.2
2,799,222	+				-0.2
2,799,260	-				+1.1
2,799,528	-		MIT1002_02510	0.51	+0.6
2,799,537	+		MIT1002_02510	0.54	+1.1
2,799,704	+				-0.2
2,799,712	-				+0.3
2,799,716	+				+0.5
2,799,726	+				+0.1
2,799,772	-				-0.4
2,799,899	-				+0.8
2,800,001	-				-0.4
2,800,020	+				+0.7
2,800,028	-				+0.6
2,800,115	+				-0.5
2,800,118	-				-1.2
2,800,120	+				+0.1
2,800,128	-				-1.1