Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02401

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,681,192	+		MIT1002_02400	0.68	-1.3
2,681,215	-		MIT1002_02400	0.69	-0.8
2,681,248	+		MIT1002_02400	0.71	-1.1
2,681,316	-		MIT1002_02400	0.74	+0.0
2,681,439	-		MIT1002_02400	0.80	-2.0
2,681,443	+		MIT1002_02400	0.80	-0.9
2,681,456	-		MIT1002_02400	0.80	-1.2
2,681,493	-		MIT1002_02400	0.82	-2.8
2,681,495	-		MIT1002_02400	0.82	-1.0
2,681,626	+		MIT1002_02400	0.88	-2.5
2,681,692	-				-0.0
2,681,771	+				-1.0
2,681,771	+				+0.7
2,681,771	+				-2.2
2,681,779	-				+0.1
2,681,883	+				-1.4
2,681,893	-				-0.7
2,683,172	+				-0.0
2,683,179	+				-1.0
2,683,180	-				+0.0
2,683,185	+				+0.2
2,683,187	-				-0.0
2,683,187	-				-1.1
2,683,293	+				+1.0
2,683,304	+				+0.9
2,683,311	-				+0.0
2,683,312	-				+1.7
2,683,313	-				-0.1
2,683,331	+				+0.3
2,683,339	-				-0.4
2,683,341	+				-0.1
2,683,341	+				+1.7
2,683,426	-		MIT1002_02402	0.14	-1.3
2,683,464	+		MIT1002_02402	0.18	+0.4
2,683,471	-		MIT1002_02402	0.19	-0.5
2,683,523	-		MIT1002_02402	0.25	+0.9
2,683,591	-		MIT1002_02402	0.33	-0.8
2,683,659	-		MIT1002_02402	0.41	+1.8
2,683,660	-		MIT1002_02402	0.41	+1.6
2,683,660	-		MIT1002_02402	0.41	-0.5
2,683,660	-		MIT1002_02402	0.41	+0.8
2,683,678	-		MIT1002_02402	0.43	+0.3
2,683,690	-		MIT1002_02402	0.45	-1.3
2,683,737	-		MIT1002_02402	0.50	+0.5
2,683,743	+		MIT1002_02402	0.51	-0.6
2,683,751	+		MIT1002_02402	0.52	+0.8
2,683,796	+		MIT1002_02402	0.57	+1.0
2,683,805	+		MIT1002_02402	0.58	+0.8
2,683,861	-		MIT1002_02402	0.65	+0.0
2,683,888	+		MIT1002_02402	0.68	-0.0
2,683,901	-		MIT1002_02402	0.69	-0.2
2,683,978	+		MIT1002_02402	0.79	-1.3
2,684,120	-				-1.7