Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02333

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,599,486	-		MIT1002_02332	0.30	-0.7
2,599,584	-		MIT1002_02332	0.39	-0.2
2,599,676	+		MIT1002_02332	0.47	-0.5
2,599,676	+		MIT1002_02332	0.47	+0.5
2,599,676	+		MIT1002_02332	0.47	-1.5
2,599,709	+		MIT1002_02332	0.50	+0.5
2,599,717	-		MIT1002_02332	0.51	-2.4
2,599,727	-		MIT1002_02332	0.52	-0.0
2,599,729	+		MIT1002_02332	0.52	+0.1
2,599,775	+		MIT1002_02332	0.56	+0.6
2,599,783	-		MIT1002_02332	0.57	+0.5
2,599,797	+		MIT1002_02332	0.58	-1.3
2,599,811	+		MIT1002_02332	0.60	+1.4
2,599,819	-		MIT1002_02332	0.60	-2.3
2,599,851	+		MIT1002_02332	0.63	-0.4
2,599,895	-		MIT1002_02332	0.67	-0.1
2,599,895	-		MIT1002_02332	0.67	-0.0
2,599,921	-		MIT1002_02332	0.69	-1.3
2,599,959	-		MIT1002_02332	0.73	+0.7
2,599,959	-		MIT1002_02332	0.73	+0.0
2,599,992	+		MIT1002_02332	0.76	-1.3
2,600,007	-		MIT1002_02332	0.77	+1.0
2,600,023	+		MIT1002_02332	0.78	+0.4
2,600,031	-		MIT1002_02332	0.79	+0.7
2,600,031	-		MIT1002_02332	0.79	+0.3
2,600,065	-		MIT1002_02332	0.82	+0.6
2,600,065	-		MIT1002_02332	0.82	-1.2
2,600,210	+				+0.6
2,600,210	+				-1.4
2,600,218	-				-0.7
2,600,225	-				+1.5
2,600,225	-				-0.2
2,600,225	-				+0.0
2,600,227	+				+0.5
2,600,228	-				-0.2
2,600,318	-				+0.5
2,600,347	+				+0.4
2,600,348	-				+0.6
2,600,355	-				-0.8
2,600,396	+				+0.2
2,600,407	-				-1.6
2,600,423	+				+1.0
2,600,431	-				+0.4
2,600,449	-				-1.0
2,600,487	+				+0.2
2,600,495	-				+0.2
2,600,502	-				-0.8
2,600,513	-				+0.5
2,600,529	+		MIT1002_02333	0.13	-0.7
2,600,537	-		MIT1002_02333	0.15	+0.1
2,600,539	-		MIT1002_02333	0.15	-0.2
2,600,557	+		MIT1002_02333	0.20	+0.4
2,600,565	+		MIT1002_02333	0.22	-1.0
2,600,722	+		MIT1002_02333	0.60	+0.5
2,600,722	+		MIT1002_02333	0.60	-2.0
2,600,722	+		MIT1002_02333	0.60	+0.3
2,600,722	+		MIT1002_02333	0.60	+0.6
2,600,722	+		MIT1002_02333	0.60	-0.5
2,600,722	+		MIT1002_02333	0.60	-1.0
2,600,730	-		MIT1002_02333	0.62	-0.1
2,600,730	-		MIT1002_02333	0.62	-1.1
2,600,730	-		MIT1002_02333	0.62	-0.0
2,600,730	-		MIT1002_02333	0.62	-0.1
2,600,730	-		MIT1002_02333	0.62	-1.7
2,600,730	-		MIT1002_02333	0.62	-0.5
2,600,730	-		MIT1002_02333	0.62	-0.8
2,600,730	-		MIT1002_02333	0.62	-0.1
2,600,730	-		MIT1002_02333	0.62	+0.9
2,600,730	-		MIT1002_02333	0.62	+2.0
2,600,762	-		MIT1002_02333	0.70	+1.1
2,600,808	-		MIT1002_02333	0.81	-0.4
2,600,908	+				+0.8
2,600,937	-				-0.3
2,600,951	-				+0.2
2,600,951	-				+0.8
2,600,989	+				-0.5
2,600,989	+				-0.2
2,601,097	-				+0.3
2,601,102	-				+1.6
2,601,226	+				-0.8
2,601,226	+				+0.0
2,601,226	+				+0.3
2,601,282	+		MIT1002_02334	0.12	-0.4
2,601,350	+		MIT1002_02334	0.18	+0.1
2,601,365	+		MIT1002_02334	0.20	-0.7
2,601,365	-		MIT1002_02334	0.20	+0.8
2,601,365	-		MIT1002_02334	0.20	+0.9
2,601,417	+		MIT1002_02334	0.25	+1.5
2,601,434	+		MIT1002_02334	0.27	-0.2
2,601,446	+		MIT1002_02334	0.28	+0.2
2,601,486	-		MIT1002_02334	0.32	+0.4
2,601,582	+		MIT1002_02334	0.41	-0.0
2,601,600	-		MIT1002_02334	0.43	-1.0
2,601,680	+		MIT1002_02334	0.51	+1.3
2,601,688	-		MIT1002_02334	0.52	+0.8
2,601,713	-		MIT1002_02334	0.54	-0.3
2,601,718	-		MIT1002_02334	0.55	+2.5
2,601,718	-		MIT1002_02334	0.55	-0.1
2,601,801	+		MIT1002_02334	0.63	-0.9
2,601,801	+		MIT1002_02334	0.63	-0.0
2,601,801	+		MIT1002_02334	0.63	+1.7
2,601,809	-		MIT1002_02334	0.64	+0.3
2,601,809	-		MIT1002_02334	0.64	+0.5
2,601,809	-		MIT1002_02334	0.64	-0.9
2,601,809	-		MIT1002_02334	0.64	+0.3
2,601,851	+		MIT1002_02334	0.68	-0.0