Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02320

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,588,144	-		MIT1002_02319	0.64	+0.9
2,588,213	+		MIT1002_02319	0.67	+0.6
2,588,287	+		MIT1002_02319	0.69	-1.3
2,588,295	-		MIT1002_02319	0.70	+0.4
2,588,301	+		MIT1002_02319	0.70	+0.5
2,588,414	-		MIT1002_02319	0.74	+0.9
2,588,460	-		MIT1002_02319	0.76	-1.2
2,588,571	-		MIT1002_02319	0.80	+1.5
2,588,607	+		MIT1002_02319	0.82	+0.8
2,588,607	+		MIT1002_02319	0.82	+1.3
2,588,615	-		MIT1002_02319	0.82	+2.9
2,588,622	+		MIT1002_02319	0.82	+0.9
2,588,641	+		MIT1002_02319	0.83	-0.5
2,588,649	-		MIT1002_02319	0.83	+1.0
2,588,656	+		MIT1002_02319	0.83	+0.8
2,588,656	+		MIT1002_02319	0.83	-1.2
2,588,656	+		MIT1002_02319	0.83	+0.9
2,588,664	-		MIT1002_02319	0.84	+0.3
2,588,671	-		MIT1002_02319	0.84	+0.9
2,588,693	-		MIT1002_02319	0.85	+0.7
2,588,708	+		MIT1002_02319	0.85	+2.0
2,588,717	+		MIT1002_02319	0.86	-1.0
2,588,759	+		MIT1002_02319	0.87	+0.6
2,588,760	-		MIT1002_02319	0.87	+0.7
2,588,767	-		MIT1002_02319	0.88	+1.5
2,588,777	+		MIT1002_02319	0.88	+0.9
2,588,826	+		MIT1002_02319	0.90	+0.8
2,588,834	-				+0.8
2,588,847	-				+0.7
2,588,930	+				+1.1
2,588,991	-				-0.1
2,588,991	-				+0.6
2,588,991	-				+1.3
2,589,003	+				+0.5
2,589,014	+				+0.9
2,589,037	+				+0.9
2,589,039	-				+0.2
2,589,039	-				+0.8
2,589,094	+				+0.3
2,589,094	+				+0.2
2,589,130	+				+0.0
2,589,140	+				+0.4
2,589,140	+				+1.0
2,589,148	-				+0.7
2,589,152	+				+1.1
2,589,162	+				-0.8
2,589,168	-				-0.3
2,589,189	-		MIT1002_02320	0.10	-0.5
2,589,233	-		MIT1002_02320	0.15	-0.4
2,589,264	+		MIT1002_02320	0.18	-1.1
2,589,279	+		MIT1002_02320	0.19	+1.2
2,589,282	+		MIT1002_02320	0.20	-0.1
2,589,355	-		MIT1002_02320	0.27	+0.6
2,589,482	-		MIT1002_02320	0.40	+0.2
2,589,488	+		MIT1002_02320	0.40	+0.3
2,589,525	-		MIT1002_02320	0.44	-0.0
2,589,527	+		MIT1002_02320	0.44	+1.1
2,589,607	+		MIT1002_02320	0.52	+0.6
2,589,615	-		MIT1002_02320	0.53	-0.8
2,589,617	-		MIT1002_02320	0.53	-1.7
2,589,683	-		MIT1002_02320	0.60	-0.3
2,589,786	-		MIT1002_02320	0.70	+0.5
2,589,863	-		MIT1002_02320	0.78	+0.7
2,589,930	-		MIT1002_02320	0.85	+0.1
2,590,095	-				+0.5
2,590,095	-				+0.1
2,590,156	+				+0.6
2,590,248	-		MIT1002_02321	0.21	-0.6
2,590,294	-		MIT1002_02321	0.27	-0.2
2,590,294	-		MIT1002_02321	0.27	-2.0
2,590,370	+		MIT1002_02321	0.39	-0.6
2,590,398	-		MIT1002_02321	0.43	-0.0
2,590,439	+		MIT1002_02321	0.49	-0.5
2,590,439	+		MIT1002_02321	0.49	+0.9
2,590,448	-		MIT1002_02321	0.50	+0.1
2,590,495	+		MIT1002_02321	0.57	+0.9
2,590,503	-		MIT1002_02321	0.58	+0.5
2,590,504	+		MIT1002_02321	0.58	-2.6
2,590,520	+		MIT1002_02321	0.61	+0.6
2,590,528	-		MIT1002_02321	0.62	-0.1
2,590,533	-		MIT1002_02321	0.63	-0.2
2,590,623	+		MIT1002_02321	0.76	+0.2
2,590,699	-		MIT1002_02321	0.87	-1.7
2,590,731	+				-0.1
2,590,731	+				-0.0
2,590,739	-				-0.5
2,590,739	-				+1.1
2,590,757	-				-0.5
2,590,759	+				-1.5
2,590,759	+				+1.5
2,590,911	+				+0.8
2,590,928	+				-3.3
2,590,962	-		MIT1002_02322	0.12	+0.7
2,590,993	+		MIT1002_02322	0.15	+2.9
2,591,012	-		MIT1002_02322	0.18	+1.3