Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02034

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,279,774	+		MIT1002_02033	0.67	+0.5
2,279,855	-		MIT1002_02033	0.71	-0.5
2,279,879	-		MIT1002_02033	0.72	-0.4
2,279,883	+		MIT1002_02033	0.72	+0.6
2,279,891	-		MIT1002_02033	0.72	-0.9
2,279,913	-		MIT1002_02033	0.73	-0.6
2,279,958	-		MIT1002_02033	0.75	+0.5
2,279,963	-		MIT1002_02033	0.75	+0.4
2,279,993	+		MIT1002_02033	0.77	+1.4
2,280,008	+		MIT1002_02033	0.77	-0.4
2,280,034	+		MIT1002_02033	0.78	+2.0
2,280,044	+		MIT1002_02033	0.79	-0.7
2,280,044	+		MIT1002_02033	0.79	+0.2
2,280,044	+		MIT1002_02033	0.79	-1.1
2,280,044	+		MIT1002_02033	0.79	+0.6
2,280,047	-		MIT1002_02033	0.79	-1.5
2,280,052	-		MIT1002_02033	0.79	-0.4
2,280,054	+		MIT1002_02033	0.79	-2.1
2,280,069	-		MIT1002_02033	0.80	-0.4
2,280,122	+		MIT1002_02033	0.82	-1.7
2,280,156	+		MIT1002_02033	0.84	-0.7
2,280,170	+		MIT1002_02033	0.84	-0.0
2,280,170	+		MIT1002_02033	0.84	+0.5
2,280,171	+		MIT1002_02033	0.84	+0.0
2,280,235	+		MIT1002_02033	0.87	-0.2
2,280,235	+		MIT1002_02033	0.87	-0.2
2,280,235	+		MIT1002_02033	0.87	+0.6
2,280,242	+		MIT1002_02033	0.87	-0.9
2,280,242	+		MIT1002_02033	0.87	-0.5
2,280,243	-		MIT1002_02033	0.87	+0.8
2,280,243	-		MIT1002_02033	0.87	-0.5
2,280,348	-				-0.0
2,280,348	-				-1.4
2,280,353	-				+0.6
2,280,371	-				-1.1
2,280,375	+				-0.6
2,280,381	-				-0.3
2,280,383	-				-0.1
2,280,400	-				+0.6
2,280,747	+				-1.0
2,280,754	+				+0.3
2,280,755	-				+0.7
2,280,901	+				+1.2
2,280,961	-				-0.0
2,281,046	+				+0.9
2,281,064	-				-1.1
2,281,082	-				-0.2
2,281,143	+				+0.1
2,281,143	+				-0.9
2,281,149	-				+0.4
2,281,252	+		MIT1002_02034	0.11	+0.5
2,281,260	-		MIT1002_02034	0.11	-0.1
2,281,265	-		MIT1002_02034	0.11	+0.1
2,281,293	+		MIT1002_02034	0.12	+1.4
2,281,473	+		MIT1002_02034	0.15	+0.6
2,281,542	-		MIT1002_02034	0.17	-0.4
2,281,563	+		MIT1002_02034	0.17	-0.3
2,281,607	+		MIT1002_02034	0.18	+0.1
2,281,615	-		MIT1002_02034	0.18	-1.0
2,281,637	-		MIT1002_02034	0.19	+0.3
2,281,647	+		MIT1002_02034	0.19	+1.0
2,281,647	-		MIT1002_02034	0.19	+0.0
2,281,662	+		MIT1002_02034	0.19	-1.9
2,281,663	+		MIT1002_02034	0.19	-0.2
2,281,663	+		MIT1002_02034	0.19	+0.3
2,281,665	-		MIT1002_02034	0.19	+0.4
2,281,665	-		MIT1002_02034	0.19	+0.3
2,281,665	-		MIT1002_02034	0.19	+0.9
2,281,671	-		MIT1002_02034	0.19	+0.4
2,281,679	-		MIT1002_02034	0.20	-1.2
2,281,695	+		MIT1002_02034	0.20	-0.4
2,281,698	+		MIT1002_02034	0.20	-0.5
2,281,716	+		MIT1002_02034	0.20	+1.6
2,281,717	-		MIT1002_02034	0.20	+0.4
2,281,717	-		MIT1002_02034	0.20	-0.0
2,281,724	-		MIT1002_02034	0.21	-1.2
2,281,724	-		MIT1002_02034	0.21	-0.3
2,281,724	-		MIT1002_02034	0.21	-1.5
2,282,023	-		MIT1002_02034	0.27	-0.8
2,282,049	-		MIT1002_02034	0.27	-0.1
2,282,110	+		MIT1002_02034	0.28	-1.5
2,282,120	-		MIT1002_02034	0.29	-0.5
2,282,120	-		MIT1002_02034	0.29	-0.1
2,282,264	-		MIT1002_02034	0.32	-0.7
2,282,305	+		MIT1002_02034	0.33	-1.9
2,282,313	-		MIT1002_02034	0.33	-0.0
2,282,315	+		MIT1002_02034	0.33	-1.0
2,282,321	-		MIT1002_02034	0.33	+0.5
2,282,332	-		MIT1002_02034	0.33	+0.7
2,282,370	-		MIT1002_02034	0.34	-0.7
2,282,423	+		MIT1002_02034	0.35	+0.6
2,282,438	+		MIT1002_02034	0.35	+0.8
2,282,446	-		MIT1002_02034	0.35	-2.4
2,282,464	+		MIT1002_02034	0.36	+0.8
2,282,474	+		MIT1002_02034	0.36	+0.2
2,282,596	-		MIT1002_02034	0.39	+1.6
2,282,598	+		MIT1002_02034	0.39	-0.0
2,282,604	+		MIT1002_02034	0.39	-0.2
2,282,641	-		MIT1002_02034	0.39	+0.6
2,282,660	+		MIT1002_02034	0.40	+1.1
2,282,692	+		MIT1002_02034	0.41	-0.1
2,282,692	+		MIT1002_02034	0.41	+0.6
2,282,692	+		MIT1002_02034	0.41	+0.6
2,282,692	+		MIT1002_02034	0.41	-0.6
2,282,700	-		MIT1002_02034	0.41	+0.4
2,282,700	-		MIT1002_02034	0.41	+1.2
2,282,727	+		MIT1002_02034	0.41	-1.6
2,282,760	+		MIT1002_02034	0.42	+2.1
2,282,899	+		MIT1002_02034	0.45	+1.9
2,283,136	+		MIT1002_02034	0.50	+0.3
2,283,136	+		MIT1002_02034	0.50	+0.9
2,283,184	-		MIT1002_02034	0.51	-0.4
2,283,213	-		MIT1002_02034	0.51	-1.0
2,283,232	-		MIT1002_02034	0.52	-0.0
2,283,279	+		MIT1002_02034	0.53	+0.1
2,283,321	+		MIT1002_02034	0.54	+0.6
2,283,468	+		MIT1002_02034	0.57	-0.7
2,283,572	-		MIT1002_02034	0.59	-0.3
2,283,615	+		MIT1002_02034	0.60	-0.7
2,283,670	+		MIT1002_02034	0.61	+0.3
2,283,678	-		MIT1002_02034	0.61	-1.1
2,283,720	-		MIT1002_02034	0.62	-0.7
2,283,734	-		MIT1002_02034	0.62	-1.0
2,283,755	-		MIT1002_02034	0.62	+0.9
2,283,799	+		MIT1002_02034	0.63	+0.7
2,283,799	+		MIT1002_02034	0.63	-4.0
2,283,799	+		MIT1002_02034	0.63	+0.9
2,283,799	+		MIT1002_02034	0.63	+0.3
2,283,799	+		MIT1002_02034	0.63	+0.4
2,283,807	-		MIT1002_02034	0.64	-3.0
2,283,807	-		MIT1002_02034	0.64	-0.3
2,283,807	-		MIT1002_02034	0.64	-0.7
2,283,807	-		MIT1002_02034	0.64	-0.2
2,283,807	-		MIT1002_02034	0.64	+0.7
2,283,841	+		MIT1002_02034	0.64	+1.5
2,283,849	+		MIT1002_02034	0.64	-1.4
2,283,922	-		MIT1002_02034	0.66	+0.2
2,283,964	+		MIT1002_02034	0.67	+1.3
2,283,964	+		MIT1002_02034	0.67	-0.4
2,283,972	-		MIT1002_02034	0.67	+0.1
2,284,090	+		MIT1002_02034	0.69	-0.2
2,284,181	+		MIT1002_02034	0.71	+0.7
2,284,181	+		MIT1002_02034	0.71	-1.4
2,284,227	-		MIT1002_02034	0.72	-0.3
2,284,296	-		MIT1002_02034	0.74	+0.3
2,284,300	+		MIT1002_02034	0.74	-0.8
2,284,308	-		MIT1002_02034	0.74	+0.6
2,284,536	+		MIT1002_02034	0.79	+1.0
2,284,551	+		MIT1002_02034	0.79	+0.1
2,284,648	-		MIT1002_02034	0.81	+0.7
2,284,655	-		MIT1002_02034	0.81	+0.2
2,284,761	+		MIT1002_02034	0.83	+0.4
2,284,769	-		MIT1002_02034	0.83	+0.3
2,284,798	+		MIT1002_02034	0.84	-0.1
2,284,886	+		MIT1002_02034	0.86	-1.7
2,284,913	+		MIT1002_02034	0.86	-0.1
2,284,963	+		MIT1002_02034	0.87	+0.4
2,284,963	+		MIT1002_02034	0.87	+0.3
2,284,963	+		MIT1002_02034	0.87	-0.1
2,284,963	+		MIT1002_02034	0.87	-2.0
2,284,971	-		MIT1002_02034	0.88	-1.1
2,285,025	-		MIT1002_02034	0.89	+1.3
2,285,084	+		MIT1002_02034	0.90	+0.0
2,285,110	-				+0.1
2,285,117	+				-0.9
2,285,125	-				+0.1
2,285,125	-				+1.3
2,285,125	-				-0.5
2,285,144	+				+0.5
2,285,210	-				+0.2
2,285,231	+				+0.5
2,285,280	-				-0.5
2,285,324	-				+0.5
2,285,371	+				-0.1
2,285,397	+				-1.3
2,285,397	+				+1.2
2,285,397	+				-1.0
2,285,397	+				+1.6
2,285,405	-				-0.4
2,285,405	-				+1.3
2,285,405	-				-3.0
2,285,405	-				-0.7
2,285,405	-				+0.1
2,285,489	+				+1.7
2,285,489	+				-0.9
2,285,497	-				+0.2
2,285,543	-				+1.3
2,285,544	-				+0.9
2,285,709	-				-2.9
2,286,266	+		MIT1002_02035	0.52	-3.1
2,286,269	-		MIT1002_02035	0.53	-2.4
2,286,427	-		MIT1002_02035	0.68	-2.5