Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02020

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,260,738	-		MIT1002_02018	0.13	+2.3
2,260,773	-		MIT1002_02018	0.20	-0.4
2,260,775	-		MIT1002_02018	0.20	+3.1
2,260,812	+		MIT1002_02018	0.27	-0.4
2,260,820	-		MIT1002_02018	0.29	-0.2
2,260,895	+		MIT1002_02018	0.43	+0.0
2,260,902	+		MIT1002_02018	0.44	+1.5
2,260,916	-		MIT1002_02018	0.47	+2.6
2,260,930	-		MIT1002_02018	0.50	+0.8
2,260,973	+		MIT1002_02018	0.58	-0.4
2,260,981	-		MIT1002_02018	0.59	-0.8
2,261,007	-		MIT1002_02018	0.64	-1.2
2,261,014	+		MIT1002_02018	0.66	-0.0
2,261,152	+				-0.8
2,261,160	-				-0.3
2,261,209	-				-0.4
2,261,409	-				-1.0
2,261,409	-				-0.3
2,261,518	+				-0.3
2,261,526	-				-0.9
2,261,609	+				-0.7
2,261,619	-				-0.2
2,261,630	-				+1.3
2,261,641	-				-0.1
2,261,761	+				-0.9
2,261,761	+				+0.2
2,261,761	+				+0.1
2,261,769	-				-0.7
2,261,769	-				-0.1
2,261,769	-				+0.4
2,261,769	-				+0.6
2,261,769	-				+0.5
2,261,769	-				-0.4
2,261,804	+				+0.3
2,261,819	+				-1.8
2,261,819	+				-0.8
2,261,857	+		MIT1002_02020	0.13	-0.9
2,261,867	+		MIT1002_02020	0.14	-0.9
2,261,987	-		MIT1002_02020	0.24	-1.2
2,262,033	-		MIT1002_02020	0.28	-0.9
2,262,047	+		MIT1002_02020	0.30	-1.3
2,262,047	+		MIT1002_02020	0.30	+0.3
2,262,055	-		MIT1002_02020	0.30	-0.1
2,262,055	-		MIT1002_02020	0.30	-0.7
2,262,085	+		MIT1002_02020	0.33	+0.2
2,262,086	+		MIT1002_02020	0.33	+0.2
2,262,093	-		MIT1002_02020	0.34	+1.4
2,262,237	+		MIT1002_02020	0.47	+0.7
2,262,243	-		MIT1002_02020	0.47	-0.6
2,262,244	+		MIT1002_02020	0.47	+0.3
2,262,252	-		MIT1002_02020	0.48	+1.4
2,262,267	-		MIT1002_02020	0.49	-2.7
2,262,309	-		MIT1002_02020	0.53	-1.2
2,262,312	+		MIT1002_02020	0.53	+0.1
2,262,401	-		MIT1002_02020	0.61	+0.7
2,262,438	+		MIT1002_02020	0.64	+0.9
2,262,482	+		MIT1002_02020	0.68	+0.0
2,262,591	-		MIT1002_02020	0.78	+0.9
2,262,606	-		MIT1002_02020	0.79	-0.3
2,262,664	+		MIT1002_02020	0.85	-0.6
2,262,672	-		MIT1002_02020	0.85	-1.4
2,262,727	+				+1.5
2,262,786	-				-2.0
2,262,805	+				-0.2
2,262,813	+				+0.7
2,262,821	-				+0.7
2,262,833	-				+0.3
2,262,848	-				-0.2
2,262,848	-				+0.2
2,262,882	+				-1.2
2,262,909	-				-0.5
2,263,012	+				-0.4
2,263,026	-				-0.4
2,263,129	-				-0.2
2,263,253	-				+0.2
2,263,328	+		MIT1002_02021	0.14	-1.2
2,263,346	+		MIT1002_02021	0.16	-3.5
2,263,370	+		MIT1002_02021	0.19	+0.5
2,263,376	-		MIT1002_02021	0.20	+0.4
2,263,378	-		MIT1002_02021	0.20	-0.6
2,263,433	+		MIT1002_02021	0.28	-0.8
2,263,439	-		MIT1002_02021	0.29	+0.3
2,263,454	+		MIT1002_02021	0.31	-1.0
2,263,465	+		MIT1002_02021	0.32	+1.5
2,263,474	-		MIT1002_02021	0.34	-0.1
2,263,491	-		MIT1002_02021	0.36	+0.3
2,263,538	-		MIT1002_02021	0.42	-0.5
2,263,570	+		MIT1002_02021	0.47	-0.0
2,263,570	+		MIT1002_02021	0.47	+0.9
2,263,622	+		MIT1002_02021	0.54	-0.2
2,263,622	+		MIT1002_02021	0.54	+0.2
2,263,630	-		MIT1002_02021	0.55	+0.3
2,263,640	-		MIT1002_02021	0.56	-2.1
2,263,651	+		MIT1002_02021	0.58	-0.0
2,263,651	+		MIT1002_02021	0.58	-0.7
2,263,659	-		MIT1002_02021	0.59	-0.5
2,263,659	-		MIT1002_02021	0.59	+0.8
2,263,659	-		MIT1002_02021	0.59	-1.5
2,263,659	-		MIT1002_02021	0.59	+0.1
2,263,676	+		MIT1002_02021	0.61	-0.0
2,263,746	-		MIT1002_02021	0.71	+1.6
2,263,780	-		MIT1002_02021	0.75	-0.1
2,263,818	-		MIT1002_02021	0.81	-0.8