Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01989

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,223,252	-		MIT1002_01987	0.52	+0.4
2,223,252	-		MIT1002_01987	0.52	+0.2
2,223,252	-		MIT1002_01987	0.52	+0.2
2,223,267	-		MIT1002_01987	0.54	-0.2
2,223,370	-		MIT1002_01987	0.69	-1.5
2,223,431	-		MIT1002_01987	0.78	-1.5
2,223,485	+		MIT1002_01987	0.86	-0.5
2,223,493	-		MIT1002_01987	0.87	-0.5
2,223,516	+				+1.6
2,223,680	-				-1.8
2,223,680	-				-0.8
2,223,680	-				+1.5
2,223,686	+		MIT1002_01988	0.10	+0.6
2,223,710	+		MIT1002_01988	0.15	+0.3
2,223,720	-		MIT1002_01988	0.18	-0.5
2,223,875	-		MIT1002_01988	0.51	+1.4
2,223,890	-		MIT1002_01988	0.54	-0.6
2,223,903	+		MIT1002_01988	0.57	-0.9
2,223,910	+		MIT1002_01988	0.59	-0.9
2,223,910	+		MIT1002_01988	0.59	+1.9
2,223,910	+		MIT1002_01988	0.59	+1.0
2,223,918	-		MIT1002_01988	0.60	-0.9
2,224,048	+		MIT1002_01988	0.89	-2.3
2,224,053	+		MIT1002_01988	0.90	+0.9
2,224,053	+		MIT1002_01988	0.90	-0.8
2,224,053	+		MIT1002_01988	0.90	-0.1
2,224,055	-				+0.4
2,224,055	-				-0.4
2,224,061	-				+0.0
2,224,065	-				-0.2
2,224,091	+				-0.3
2,224,195	-				+0.6
2,224,276	+				-0.2
2,224,296	+				+0.0
2,224,296	+				-0.9
2,224,297	-				-1.0
2,224,299	+				-0.0
2,224,306	+				-0.6
2,224,306	+				+1.4
2,224,306	+				+0.2
2,224,314	-				-0.2
2,224,314	-				-0.1
2,224,318	-				+0.7
2,224,501	+		MIT1002_01989	0.24	-0.2
2,224,517	-		MIT1002_01989	0.25	+0.3
2,224,522	-		MIT1002_01989	0.26	+0.6
2,224,522	-		MIT1002_01989	0.26	+0.5
2,224,522	-		MIT1002_01989	0.26	+0.2
2,224,575	+		MIT1002_01989	0.30	-0.3
2,224,636	-		MIT1002_01989	0.36	+0.2
2,224,636	-		MIT1002_01989	0.36	-0.4
2,224,636	-		MIT1002_01989	0.36	+0.1
2,224,636	-		MIT1002_01989	0.36	-0.1
2,224,636	-		MIT1002_01989	0.36	+0.5
2,224,638	+		MIT1002_01989	0.36	+0.7
2,224,646	-		MIT1002_01989	0.37	-0.1
2,224,646	-		MIT1002_01989	0.37	+0.4
2,224,646	-		MIT1002_01989	0.37	+0.2
2,224,700	+		MIT1002_01989	0.42	-0.4
2,224,700	+		MIT1002_01989	0.42	+0.8
2,224,701	-		MIT1002_01989	0.42	-0.2
2,224,708	-		MIT1002_01989	0.43	-1.5
2,224,775	+		MIT1002_01989	0.49	+0.1
2,224,775	+		MIT1002_01989	0.49	-0.4
2,224,817	-		MIT1002_01989	0.53	+0.3
2,224,822	-		MIT1002_01989	0.53	+0.9
2,224,915	+		MIT1002_01989	0.62	+0.6
2,224,927	+		MIT1002_01989	0.63	+0.3
2,224,960	+		MIT1002_01989	0.66	+0.9
2,224,976	-		MIT1002_01989	0.68	-0.8
2,225,002	+		MIT1002_01989	0.70	+0.5
2,225,052	-		MIT1002_01989	0.75	-0.4
2,225,193	+		MIT1002_01989	0.88	-0.5
2,225,193	+		MIT1002_01989	0.88	-0.4
2,225,193	+		MIT1002_01989	0.88	+0.1
2,225,193	+		MIT1002_01989	0.88	-0.6
2,225,201	-		MIT1002_01989	0.89	-1.0
2,225,232	-				-0.5
2,225,251	+				-1.9
2,225,267	+				+0.7
2,225,277	-				-1.9
2,225,291	+				+0.0
2,225,306	+				-0.7
2,225,374	+				-1.9
2,225,430	+		MIT1002_01990	0.13	-1.2
2,225,482	-		MIT1002_01990	0.19	+1.0
2,225,519	+		MIT1002_01990	0.24	-0.7
2,225,527	-		MIT1002_01990	0.25	-0.2
2,225,584	+		MIT1002_01990	0.32	-0.0
2,225,592	-		MIT1002_01990	0.32	+0.9
2,225,592	-		MIT1002_01990	0.32	-0.5
2,225,592	-		MIT1002_01990	0.32	-1.5
2,225,592	-		MIT1002_01990	0.32	-1.3
2,225,609	+		MIT1002_01990	0.35	+0.1
2,225,623	+		MIT1002_01990	0.36	-1.4
2,225,658	+		MIT1002_01990	0.40	+0.3
2,225,658	+		MIT1002_01990	0.40	+0.3
2,225,806	+		MIT1002_01990	0.58	-1.7
2,225,857	-		MIT1002_01990	0.64	-1.2
2,225,879	-		MIT1002_01990	0.67	-0.6
2,225,897	-		MIT1002_01990	0.69	+0.5
2,226,168	+				-0.1
2,226,178	+				+3.0
2,226,178	-				-0.3
2,226,254	-				+1.2
2,226,292	+				+0.5
2,226,292	+				-0.8
2,226,310	-				-0.2