Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01973

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,205,836	-				+0.2
2,206,045	+				-0.4
2,206,089	+		MIT1002_01972	0.11	+1.3
2,206,129	+		MIT1002_01972	0.17	-0.5
2,206,146	+		MIT1002_01972	0.19	-0.7
2,206,183	+		MIT1002_01972	0.24	-0.3
2,206,308	+		MIT1002_01972	0.40	-0.2
2,206,333	+		MIT1002_01972	0.43	+2.1
2,206,350	+		MIT1002_01972	0.46	-0.3
2,206,357	-		MIT1002_01972	0.47	+0.2
2,206,358	-		MIT1002_01972	0.47	-0.7
2,206,384	+		MIT1002_01972	0.50	+0.2
2,206,384	+		MIT1002_01972	0.50	-0.3
2,206,443	+		MIT1002_01972	0.58	-0.5
2,206,451	+		MIT1002_01972	0.59	+0.6
2,206,482	-		MIT1002_01972	0.63	-0.4
2,206,537	-		MIT1002_01972	0.70	-0.7
2,206,537	-		MIT1002_01972	0.70	+0.9
2,206,542	+		MIT1002_01972	0.71	+0.4
2,206,564	+		MIT1002_01972	0.74	+1.8
2,206,572	-		MIT1002_01972	0.75	-0.2
2,206,614	+		MIT1002_01972	0.80	-0.1
2,206,625	-		MIT1002_01972	0.82	-1.3
2,206,671	+		MIT1002_01972	0.88	-0.6
2,206,679	-		MIT1002_01972	0.89	+0.4
2,206,693	+				-0.4
2,206,693	+				+0.5
2,206,703	+				+0.1
2,206,705	+				+2.0
2,206,773	-				-0.0
2,206,888	-		MIT1002_01973	0.15	+0.7
2,206,935	+		MIT1002_01973	0.21	-0.4
2,206,938	-		MIT1002_01973	0.21	-0.6
2,206,943	-		MIT1002_01973	0.22	+0.4
2,207,012	+		MIT1002_01973	0.31	+0.2
2,207,021	-		MIT1002_01973	0.32	+0.1
2,207,087	-		MIT1002_01973	0.41	-0.6
2,207,115	+		MIT1002_01973	0.45	+1.5
2,207,115	+		MIT1002_01973	0.45	+0.4
2,207,115	+		MIT1002_01973	0.45	-0.0
2,207,123	-		MIT1002_01973	0.46	-0.6
2,207,123	-		MIT1002_01973	0.46	+0.9
2,207,123	-		MIT1002_01973	0.46	-0.7
2,207,123	-		MIT1002_01973	0.46	+0.6
2,207,133	-		MIT1002_01973	0.47	+0.9
2,207,138	+		MIT1002_01973	0.48	-0.0
2,207,138	+		MIT1002_01973	0.48	+0.3
2,207,185	+		MIT1002_01973	0.54	+3.1
2,207,190	+		MIT1002_01973	0.55	-0.3
2,207,193	-		MIT1002_01973	0.55	+0.1
2,207,336	-		MIT1002_01973	0.75	-0.0
2,207,412	+		MIT1002_01973	0.85	-0.1
2,207,412	-		MIT1002_01973	0.85	-2.1
2,207,471	+				-0.2
2,207,477	+				+0.3
2,207,570	+				+0.4
2,207,580	-				+0.3
2,207,580	-				-0.2
2,207,580	-				-0.7
2,207,595	+				-0.5
2,207,597	+				+3.0
2,207,599	-				+0.3
2,207,616	+				-1.3
2,207,679	+				-0.7
2,207,687	-				-0.5
2,207,734	+		MIT1002_01974	0.11	-0.7
2,207,759	+		MIT1002_01974	0.13	+0.8
2,207,821	-		MIT1002_01974	0.19	+0.5
2,207,976	+		MIT1002_01974	0.34	-0.4
2,207,976	+		MIT1002_01974	0.34	-0.4
2,207,984	-		MIT1002_01974	0.35	-1.2
2,207,984	-		MIT1002_01974	0.35	-1.2
2,207,984	-		MIT1002_01974	0.35	-0.0
2,207,984	-		MIT1002_01974	0.35	-1.3
2,207,984	-		MIT1002_01974	0.35	+0.0
2,208,025	-		MIT1002_01974	0.39	+0.5
2,208,080	+		MIT1002_01974	0.44	-0.7
2,208,085	-		MIT1002_01974	0.45	-0.8
2,208,093	+		MIT1002_01974	0.46	+0.2
2,208,093	+		MIT1002_01974	0.46	-1.2
2,208,101	-		MIT1002_01974	0.46	-1.5
2,208,101	-		MIT1002_01974	0.46	-0.1
2,208,172	-		MIT1002_01974	0.53	-1.2
2,208,172	-		MIT1002_01974	0.53	+0.8
2,208,172	-		MIT1002_01974	0.53	-0.3
2,208,213	+		MIT1002_01974	0.57	+0.8
2,208,213	+		MIT1002_01974	0.57	+0.3
2,208,213	+		MIT1002_01974	0.57	-0.0
2,208,221	-		MIT1002_01974	0.58	-0.0
2,208,348	+		MIT1002_01974	0.70	-0.3
2,208,348	+		MIT1002_01974	0.70	-0.6
2,208,358	+		MIT1002_01974	0.71	-0.7