Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01879

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
2,090,088	+		MIT1002_01877	0.86	-1.4
2,090,088	+		MIT1002_01877	0.86	-1.0
2,090,088	+		MIT1002_01877	0.86	+0.1
2,090,096	-		MIT1002_01877	0.86	+0.2
2,090,096	-		MIT1002_01877	0.86	-0.1
2,090,136	+		MIT1002_01877	0.89	-0.1
2,090,144	-		MIT1002_01877	0.89	+0.5
2,090,144	-		MIT1002_01877	0.89	+0.1
2,090,146	+		MIT1002_01877	0.90	-0.7
2,090,154	-				-0.6
2,090,166	+				-1.4
2,090,166	+				-0.7
2,090,258	+				-1.9
2,090,271	-				+1.0
2,090,300	-				+1.0
2,090,368	-				-0.3
2,090,406	+				-0.1
2,090,472	+				+0.1
2,090,472	+				+0.5
2,090,482	+				+0.8
2,090,482	+				-0.8
2,090,490	-				-2.0
2,090,499	+				+0.2
2,090,508	+				+0.3
2,090,541	-		MIT1002_01878	0.14	+0.5
2,090,544	+		MIT1002_01878	0.15	+0.2
2,090,551	+		MIT1002_01878	0.16	+0.6
2,090,615	+		MIT1002_01878	0.28	+0.1
2,090,623	-		MIT1002_01878	0.29	+0.1
2,090,671	+		MIT1002_01878	0.38	-1.7
2,090,773	+		MIT1002_01878	0.58	-2.1
2,090,783	-		MIT1002_01878	0.60	-0.9
2,090,902	-		MIT1002_01878	0.82	-0.9
2,090,923	+		MIT1002_01878	0.86	+0.1
2,090,923	+		MIT1002_01878	0.86	-0.0
2,090,933	+		MIT1002_01878	0.88	-0.2
2,091,055	+				+0.5
2,091,212	-		MIT1002_01879	0.28	+0.1
2,091,246	-		MIT1002_01879	0.32	-1.1
2,091,257	-		MIT1002_01879	0.34	-1.6
2,091,358	+		MIT1002_01879	0.48	+0.4
2,091,366	-		MIT1002_01879	0.49	-0.5
2,091,426	+		MIT1002_01879	0.58	+0.1
2,091,434	-		MIT1002_01879	0.59	+0.1
2,091,476	+		MIT1002_01879	0.65	-0.3
2,091,504	+		MIT1002_01879	0.69	-0.7
2,091,534	+		MIT1002_01879	0.73	+0.2
2,091,539	+		MIT1002_01879	0.74	-1.0
2,091,542	-		MIT1002_01879	0.74	+0.0
2,091,547	+		MIT1002_01879	0.75	+0.5
2,091,547	-		MIT1002_01879	0.75	-0.4
2,091,568	-		MIT1002_01879	0.78	-1.0
2,091,585	+		MIT1002_01879	0.80	-0.1
2,091,592	-		MIT1002_01879	0.81	-0.8
2,091,604	+		MIT1002_01879	0.83	+0.0
2,091,632	-		MIT1002_01879	0.87	-0.8
2,091,661	+				+1.1
2,091,679	-				+0.9
2,091,716	+				-0.0
2,091,730	-				+0.4
2,091,740	+				-0.3
2,091,905	+		MIT1002_01880	0.13	+0.9
2,091,905	+		MIT1002_01880	0.13	-2.1
2,091,926	-		MIT1002_01880	0.16	-2.0
2,091,958	+		MIT1002_01880	0.20	+0.6
2,092,002	+		MIT1002_01880	0.25	-0.0
2,092,007	+		MIT1002_01880	0.26	-1.2
2,092,007	+		MIT1002_01880	0.26	+0.9
2,092,028	+		MIT1002_01880	0.28	+0.1
2,092,030	-		MIT1002_01880	0.28	+1.7
2,092,098	+		MIT1002_01880	0.37	+0.3
2,092,127	-		MIT1002_01880	0.40	-1.8
2,092,146	+		MIT1002_01880	0.42	+0.1
2,092,177	+		MIT1002_01880	0.46	-0.9
2,092,180	-		MIT1002_01880	0.46	-0.1
2,092,183	+		MIT1002_01880	0.47	+1.1
2,092,183	+		MIT1002_01880	0.47	+1.0
2,092,293	-		MIT1002_01880	0.60	-0.8
2,092,316	-		MIT1002_01880	0.63	-0.7
2,092,326	+		MIT1002_01880	0.64	-0.1
2,092,441	-		MIT1002_01880	0.78	+0.1
2,092,494	+		MIT1002_01880	0.84	+0.1
2,092,540	+		MIT1002_01880	0.90	+1.2
2,092,698	+				+0.8
2,092,706	-				+0.7
2,092,706	-				+0.6