Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01738

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01737 and MIT1002_01738 are separated by 59 nucleotidesMIT1002_01738 and MIT1002_01739 overlap by 1 nucleotidesMIT1002_01739 and MIT1002_01740 are separated by 63 nucleotides MIT1002_01737: MIT1002_01737 - putative aminodeoxychorismate lyase, at 1,929,486 to 1,930,505 _01737 MIT1002_01738: MIT1002_01738 - Thymidylate kinase, at 1,930,565 to 1,931,239 _01738 MIT1002_01739: MIT1002_01739 - DNA polymerase III subunit delta', at 1,931,239 to 1,932,126 _01739 MIT1002_01740: MIT1002_01740 - putative deoxyribonuclease YcfH, at 1,932,190 to 1,932,972 _01740 Position (kb) 1930 1931 1932Strain fitness (log2 ratio) -2 -1 0 1 2at 1929.628 kb on - strand, within MIT1002_01737at 1929.640 kb on - strand, within MIT1002_01737at 1929.720 kb on + strand, within MIT1002_01737at 1929.745 kb on + strand, within MIT1002_01737at 1929.788 kb on - strand, within MIT1002_01737at 1929.807 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.837 kb on + strand, within MIT1002_01737at 1929.838 kb on + strand, within MIT1002_01737at 1929.838 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.844 kb on + strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.845 kb on - strand, within MIT1002_01737at 1929.852 kb on - strand, within MIT1002_01737at 1929.852 kb on - strand, within MIT1002_01737at 1929.852 kb on - strand, within MIT1002_01737at 1929.864 kb on - strand, within MIT1002_01737at 1929.864 kb on - strand, within MIT1002_01737at 1929.864 kb on - strand, within MIT1002_01737at 1929.929 kb on + strand, within MIT1002_01737at 1929.929 kb on + strand, within MIT1002_01737at 1929.929 kb on + strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1929.937 kb on - strand, within MIT1002_01737at 1930.044 kb on - strand, within MIT1002_01737at 1930.081 kb on + strand, within MIT1002_01737at 1930.100 kb on + strand, within MIT1002_01737at 1930.101 kb on + strand, within MIT1002_01737at 1930.121 kb on - strand, within MIT1002_01737at 1930.122 kb on + strand, within MIT1002_01737at 1930.130 kb on - strand, within MIT1002_01737at 1930.130 kb on - strand, within MIT1002_01737at 1930.130 kb on - strand, within MIT1002_01737at 1930.297 kb on - strand, within MIT1002_01737at 1930.308 kb on - strand, within MIT1002_01737at 1930.334 kb on + strand, within MIT1002_01737at 1930.342 kb on - strand, within MIT1002_01737at 1930.347 kb on - strand, within MIT1002_01737at 1930.383 kb on + strand, within MIT1002_01737at 1930.383 kb on + strand, within MIT1002_01737at 1930.391 kb on - strand, within MIT1002_01737at 1930.436 kb on - strandat 1931.228 kb on + strandat 1932.229 kb on - strandat 1932.233 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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1,929,628 - MIT1002_01737 0.14 +0.4
1,929,640 - MIT1002_01737 0.15 -2.1
1,929,720 + MIT1002_01737 0.23 +0.4
1,929,745 + MIT1002_01737 0.25 +0.5
1,929,788 - MIT1002_01737 0.30 -1.2
1,929,807 + MIT1002_01737 0.31 +0.6
1,929,837 + MIT1002_01737 0.34 +1.4
1,929,837 + MIT1002_01737 0.34 -1.7
1,929,837 + MIT1002_01737 0.34 +0.8
1,929,837 + MIT1002_01737 0.34 -0.4
1,929,837 + MIT1002_01737 0.34 +1.9
1,929,837 + MIT1002_01737 0.34 -1.8
1,929,838 + MIT1002_01737 0.35 +0.2
1,929,838 + MIT1002_01737 0.35 +0.4
1,929,844 + MIT1002_01737 0.35 +0.3
1,929,844 + MIT1002_01737 0.35 +0.2
1,929,844 + MIT1002_01737 0.35 +0.1
1,929,844 + MIT1002_01737 0.35 -0.1
1,929,844 + MIT1002_01737 0.35 +0.7
1,929,845 - MIT1002_01737 0.35 +0.5
1,929,845 - MIT1002_01737 0.35 -1.9
1,929,845 - MIT1002_01737 0.35 -0.2
1,929,845 - MIT1002_01737 0.35 -1.0
1,929,845 - MIT1002_01737 0.35 -0.5
1,929,845 - MIT1002_01737 0.35 -0.0
1,929,845 - MIT1002_01737 0.35 +0.1
1,929,852 - MIT1002_01737 0.36 +0.6
1,929,852 - MIT1002_01737 0.36 +0.5
1,929,852 - MIT1002_01737 0.36 -0.4
1,929,864 - MIT1002_01737 0.37 +0.8
1,929,864 - MIT1002_01737 0.37 -0.2
1,929,864 - MIT1002_01737 0.37 -0.1
1,929,929 + MIT1002_01737 0.43 +0.2
1,929,929 + MIT1002_01737 0.43 +1.2
1,929,929 + MIT1002_01737 0.43 +0.3
1,929,937 - MIT1002_01737 0.44 +0.1
1,929,937 - MIT1002_01737 0.44 -0.0
1,929,937 - MIT1002_01737 0.44 -1.2
1,929,937 - MIT1002_01737 0.44 -0.6
1,929,937 - MIT1002_01737 0.44 +0.5
1,929,937 - MIT1002_01737 0.44 -1.1
1,930,044 - MIT1002_01737 0.55 +0.9
1,930,081 + MIT1002_01737 0.58 +1.0
1,930,100 + MIT1002_01737 0.60 +0.1
1,930,101 + MIT1002_01737 0.60 +0.6
1,930,121 - MIT1002_01737 0.62 -0.2
1,930,122 + MIT1002_01737 0.62 +0.3
1,930,130 - MIT1002_01737 0.63 -1.6
1,930,130 - MIT1002_01737 0.63 -0.2
1,930,130 - MIT1002_01737 0.63 -0.4
1,930,297 - MIT1002_01737 0.80 +0.1
1,930,308 - MIT1002_01737 0.81 -1.6
1,930,334 + MIT1002_01737 0.83 +1.3
1,930,342 - MIT1002_01737 0.84 +0.8
1,930,347 - MIT1002_01737 0.84 -0.3
1,930,383 + MIT1002_01737 0.88 +1.0
1,930,383 + MIT1002_01737 0.88 -1.8
1,930,391 - MIT1002_01737 0.89 -1.1
1,930,436 - +0.8
1,931,228 + -1.4
1,932,229 - -1.2
1,932,233 + +0.4

Or see this region's nucleotide sequence