Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01714

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
1,904,019	+		MIT1002_01713	0.64	+0.1
1,904,051	-		MIT1002_01713	0.65	+1.6
1,904,102	-		MIT1002_01713	0.68	+0.8
1,904,117	-		MIT1002_01713	0.68	+0.1
1,904,117	-		MIT1002_01713	0.68	-0.1
1,904,117	-		MIT1002_01713	0.68	-0.1
1,904,118	+		MIT1002_01713	0.68	-0.5
1,904,118	+		MIT1002_01713	0.68	-1.0
1,904,268	-		MIT1002_01713	0.75	+0.0
1,904,277	+		MIT1002_01713	0.75	+0.4
1,904,399	+		MIT1002_01713	0.80	-0.3
1,904,399	+		MIT1002_01713	0.80	-0.3
1,904,407	-		MIT1002_01713	0.81	+0.8
1,904,407	-		MIT1002_01713	0.81	-1.0
1,904,426	+		MIT1002_01713	0.81	-1.8
1,904,432	+		MIT1002_01713	0.82	-0.1
1,904,434	+		MIT1002_01713	0.82	+0.3
1,904,485	+		MIT1002_01713	0.84	+0.2
1,904,516	+		MIT1002_01713	0.85	-0.0
1,904,524	-		MIT1002_01713	0.86	-0.5
1,904,543	+		MIT1002_01713	0.86	-2.8
1,904,637	-				+0.1
1,904,689	-				+0.4
1,904,692	+				+0.0
1,904,692	+				-1.2
1,904,707	+				-0.6
1,904,713	+				+0.2
1,904,715	-				-0.1
1,904,727	-				-0.0
1,904,784	+				+0.5
1,904,784	+				+0.7
1,904,784	+				+0.6
1,904,787	-				-0.1
1,904,792	-				-0.5
1,904,792	-				+0.0
1,904,792	-				+0.4
1,904,794	+				-0.1
1,904,794	+				+1.1
1,904,794	+				+0.2
1,904,794	+				-0.0
1,904,794	+				+0.5
1,904,794	+				+0.6
1,904,831	+				-0.2
1,904,941	+				+1.4
1,904,976	-				-0.5
1,904,982	-				-0.6
1,904,983	-				-0.2
1,905,012	+				-0.5
1,905,044	+				-0.0
1,905,059	+				-1.9
1,905,062	-				+2.2
1,905,087	-				+0.8
1,905,250	-		MIT1002_01714	0.25	-0.3
1,905,292	-		MIT1002_01714	0.29	-0.9
1,905,292	-		MIT1002_01714	0.29	+0.4
1,905,340	+		MIT1002_01714	0.34	+1.4
1,905,348	-		MIT1002_01714	0.35	+0.5
1,905,365	+		MIT1002_01714	0.36	+0.7
1,905,422	+		MIT1002_01714	0.42	+0.5
1,905,450	-		MIT1002_01714	0.45	-1.0
1,905,545	+		MIT1002_01714	0.54	+1.5
1,905,548	+		MIT1002_01714	0.54	-1.2
1,905,741	-		MIT1002_01714	0.73	-0.3
1,905,798	+		MIT1002_01714	0.79	+0.3
1,905,798	+		MIT1002_01714	0.79	-0.0
1,905,833	+		MIT1002_01714	0.82	+0.3
1,905,883	+		MIT1002_01714	0.87	-0.3
1,905,978	+				+0.3
1,905,980	+				-0.5
1,905,986	-				-2.1
1,905,987	+				+1.4
1,906,034	+				+0.1
1,906,037	+				+0.4
1,906,117	+		MIT1002_01715	0.14	-1.3
1,906,156	+		MIT1002_01715	0.20	-1.3
1,906,193	-		MIT1002_01715	0.25	-0.2
1,906,200	+		MIT1002_01715	0.26	+0.2
1,906,208	-		MIT1002_01715	0.28	-1.6
1,906,276	+		MIT1002_01715	0.38	-1.4
1,906,276	+		MIT1002_01715	0.38	-0.1
1,906,283	+		MIT1002_01715	0.39	-0.1
1,906,284	-		MIT1002_01715	0.39	-0.0
1,906,284	-		MIT1002_01715	0.39	+1.2
1,906,316	+		MIT1002_01715	0.44	-0.8
1,906,365	-		MIT1002_01715	0.51	+0.4
1,906,424	-		MIT1002_01715	0.59	-0.6
1,906,428	+		MIT1002_01715	0.60	-0.0
1,906,460	+		MIT1002_01715	0.65	+1.4
1,906,468	-		MIT1002_01715	0.66	-0.6
1,906,518	+		MIT1002_01715	0.73	+0.2
1,906,541	+		MIT1002_01715	0.77	+0.8
1,906,541	+		MIT1002_01715	0.77	+1.8
1,906,541	+		MIT1002_01715	0.77	+0.1
1,906,549	-		MIT1002_01715	0.78	+0.2
1,906,553	+		MIT1002_01715	0.78	+0.9
1,906,577	+		MIT1002_01715	0.82	-0.8
1,906,752	-				+0.4
1,906,764	-				-1.2
1,906,764	-				+2.6
1,906,769	-				+1.0
1,906,769	-				+1.1
1,906,769	-				+0.7
1,906,769	-				-0.4
1,906,919	-		MIT1002_01716	0.36	+1.2
1,906,924	+		MIT1002_01716	0.37	+0.9
1,906,962	+		MIT1002_01716	0.46	+0.6