Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01282

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01281 and MIT1002_01282 overlap by 1 nucleotidesMIT1002_01282 and MIT1002_01283 overlap by 8 nucleotidesMIT1002_01283 and MIT1002_01284 overlap by 1 nucleotides MIT1002_01281: MIT1002_01281 - putative O-linked N-acetylglucosamine transferase, SPINDLY family, at 1,414,211 to 1,416,274 _01281 MIT1002_01282: MIT1002_01282 - VWFA-related Acidobacterial domain protein, at 1,416,274 to 1,417,350 _01282 MIT1002_01283: MIT1002_01283 - hypothetical protein, at 1,417,343 to 1,417,993 _01283 MIT1002_01284: MIT1002_01284 - hypothetical protein, at 1,417,993 to 1,418,967 _01284 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -2 -1 0 1 2at 1415.365 kb on + strand, within MIT1002_01281at 1415.500 kb on - strand, within MIT1002_01281at 1415.525 kb on + strand, within MIT1002_01281at 1415.610 kb on - strand, within MIT1002_01281at 1415.619 kb on - strand, within MIT1002_01281at 1415.627 kb on + strand, within MIT1002_01281at 1415.627 kb on + strand, within MIT1002_01281at 1415.627 kb on - strand, within MIT1002_01281at 1415.665 kb on + strand, within MIT1002_01281at 1415.688 kb on + strand, within MIT1002_01281at 1415.721 kb on - strand, within MIT1002_01281at 1415.726 kb on + strand, within MIT1002_01281at 1415.726 kb on + strand, within MIT1002_01281at 1415.726 kb on + strand, within MIT1002_01281at 1415.726 kb on + strand, within MIT1002_01281at 1415.734 kb on - strand, within MIT1002_01281at 1415.740 kb on - strand, within MIT1002_01281at 1415.779 kb on + strand, within MIT1002_01281at 1415.779 kb on + strand, within MIT1002_01281at 1415.793 kb on - strand, within MIT1002_01281at 1415.794 kb on - strand, within MIT1002_01281at 1415.815 kb on + strand, within MIT1002_01281at 1415.817 kb on + strand, within MIT1002_01281at 1415.825 kb on - strand, within MIT1002_01281at 1415.832 kb on - strand, within MIT1002_01281at 1415.917 kb on + strand, within MIT1002_01281at 1415.925 kb on - strand, within MIT1002_01281at 1415.974 kb on + strand, within MIT1002_01281at 1415.998 kb on + strand, within MIT1002_01281at 1416.051 kb on - strand, within MIT1002_01281at 1416.088 kb on + strandat 1416.203 kb on + strandat 1416.292 kb on + strandat 1416.302 kb on + strandat 1416.307 kb on + strandat 1416.322 kb on + strandat 1416.322 kb on + strandat 1416.330 kb on - strandat 1416.330 kb on - strandat 1416.330 kb on - strandat 1416.397 kb on + strand, within MIT1002_01282at 1416.400 kb on + strand, within MIT1002_01282at 1416.412 kb on + strand, within MIT1002_01282at 1416.454 kb on + strand, within MIT1002_01282at 1416.666 kb on + strand, within MIT1002_01282at 1416.666 kb on + strand, within MIT1002_01282at 1416.674 kb on + strand, within MIT1002_01282at 1416.674 kb on - strand, within MIT1002_01282at 1416.682 kb on - strand, within MIT1002_01282at 1416.689 kb on - strand, within MIT1002_01282at 1416.717 kb on + strand, within MIT1002_01282at 1416.748 kb on - strand, within MIT1002_01282at 1416.750 kb on - strand, within MIT1002_01282at 1416.807 kb on + strand, within MIT1002_01282at 1416.815 kb on - strand, within MIT1002_01282at 1416.901 kb on + strand, within MIT1002_01282at 1416.901 kb on + strand, within MIT1002_01282at 1416.909 kb on - strand, within MIT1002_01282at 1416.945 kb on + strand, within MIT1002_01282at 1416.945 kb on + strand, within MIT1002_01282at 1416.953 kb on - strand, within MIT1002_01282at 1417.116 kb on + strand, within MIT1002_01282at 1417.116 kb on + strand, within MIT1002_01282at 1417.116 kb on + strand, within MIT1002_01282at 1417.124 kb on + strand, within MIT1002_01282at 1417.124 kb on - strand, within MIT1002_01282at 1417.124 kb on - strand, within MIT1002_01282at 1417.124 kb on - strand, within MIT1002_01282at 1417.193 kb on - strand, within MIT1002_01282at 1417.212 kb on + strand, within MIT1002_01282at 1417.270 kb on - strandat 1417.275 kb on - strandat 1417.304 kb on + strandat 1417.304 kb on + strandat 1417.381 kb on + strandat 1417.415 kb on + strand, within MIT1002_01283at 1417.498 kb on + strand, within MIT1002_01283at 1417.528 kb on - strand, within MIT1002_01283at 1417.600 kb on + strand, within MIT1002_01283at 1417.607 kb on + strand, within MIT1002_01283at 1417.619 kb on - strand, within MIT1002_01283at 1417.717 kb on + strand, within MIT1002_01283at 1417.726 kb on - strand, within MIT1002_01283at 1417.745 kb on - strand, within MIT1002_01283at 1417.750 kb on - strand, within MIT1002_01283at 1417.815 kb on + strand, within MIT1002_01283at 1417.821 kb on + strand, within MIT1002_01283at 1417.839 kb on + strand, within MIT1002_01283at 1417.849 kb on + strand, within MIT1002_01283at 1417.849 kb on + strand, within MIT1002_01283at 1417.857 kb on - strand, within MIT1002_01283at 1417.980 kb on + strandat 1418.035 kb on - strandat 1418.035 kb on - strandat 1418.046 kb on + strandat 1418.106 kb on - strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.113 kb on + strand, within MIT1002_01284at 1418.121 kb on - strand, within MIT1002_01284at 1418.121 kb on - strand, within MIT1002_01284at 1418.121 kb on - strand, within MIT1002_01284at 1418.121 kb on - strand, within MIT1002_01284at 1418.121 kb on - strand, within MIT1002_01284at 1418.121 kb on - strand, within MIT1002_01284at 1418.207 kb on - strand, within MIT1002_01284at 1418.282 kb on + strand, within MIT1002_01284at 1418.286 kb on - strand, within MIT1002_01284at 1418.286 kb on - strand, within MIT1002_01284at 1418.318 kb on + strand, within MIT1002_01284at 1418.342 kb on + strand, within MIT1002_01284

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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1,415,365 + MIT1002_01281 0.56 -1.5
1,415,500 - MIT1002_01281 0.62 +0.3
1,415,525 + MIT1002_01281 0.64 -1.6
1,415,610 - MIT1002_01281 0.68 -0.7
1,415,619 - MIT1002_01281 0.68 -1.2
1,415,627 + MIT1002_01281 0.69 -1.4
1,415,627 + MIT1002_01281 0.69 -1.9
1,415,627 - MIT1002_01281 0.69 -1.6
1,415,665 + MIT1002_01281 0.70 -0.7
1,415,688 + MIT1002_01281 0.72 -2.1
1,415,721 - MIT1002_01281 0.73 +0.4
1,415,726 + MIT1002_01281 0.73 +0.5
1,415,726 + MIT1002_01281 0.73 +0.7
1,415,726 + MIT1002_01281 0.73 -0.1
1,415,726 + MIT1002_01281 0.73 +1.3
1,415,734 - MIT1002_01281 0.74 +0.3
1,415,740 - MIT1002_01281 0.74 -0.2
1,415,779 + MIT1002_01281 0.76 +1.3
1,415,779 + MIT1002_01281 0.76 -1.1
1,415,793 - MIT1002_01281 0.77 +0.1
1,415,794 - MIT1002_01281 0.77 -0.6
1,415,815 + MIT1002_01281 0.78 -0.5
1,415,817 + MIT1002_01281 0.78 +0.3
1,415,825 - MIT1002_01281 0.78 -0.4
1,415,832 - MIT1002_01281 0.79 +0.5
1,415,917 + MIT1002_01281 0.83 +0.1
1,415,925 - MIT1002_01281 0.83 -0.3
1,415,974 + MIT1002_01281 0.85 -0.1
1,415,998 + MIT1002_01281 0.87 +1.0
1,416,051 - MIT1002_01281 0.89 -0.9
1,416,088 + +0.2
1,416,203 + -0.3
1,416,292 + +0.8
1,416,302 + -1.3
1,416,307 + +1.3
1,416,322 + -2.1
1,416,322 + +0.0
1,416,330 - -0.9
1,416,330 - -0.6
1,416,330 - +0.5
1,416,397 + MIT1002_01282 0.11 -1.8
1,416,400 + MIT1002_01282 0.12 +0.7
1,416,412 + MIT1002_01282 0.13 +0.6
1,416,454 + MIT1002_01282 0.17 -1.3
1,416,666 + MIT1002_01282 0.36 -0.6
1,416,666 + MIT1002_01282 0.36 -0.7
1,416,674 + MIT1002_01282 0.37 -0.4
1,416,674 - MIT1002_01282 0.37 +2.5
1,416,682 - MIT1002_01282 0.38 -0.9
1,416,689 - MIT1002_01282 0.39 +0.5
1,416,717 + MIT1002_01282 0.41 +0.2
1,416,748 - MIT1002_01282 0.44 -0.9
1,416,750 - MIT1002_01282 0.44 -0.1
1,416,807 + MIT1002_01282 0.49 -1.3
1,416,815 - MIT1002_01282 0.50 -1.3
1,416,901 + MIT1002_01282 0.58 -1.3
1,416,901 + MIT1002_01282 0.58 +0.2
1,416,909 - MIT1002_01282 0.59 +0.9
1,416,945 + MIT1002_01282 0.62 -0.6
1,416,945 + MIT1002_01282 0.62 +0.2
1,416,953 - MIT1002_01282 0.63 -1.6
1,417,116 + MIT1002_01282 0.78 -0.8
1,417,116 + MIT1002_01282 0.78 +0.5
1,417,116 + MIT1002_01282 0.78 -2.1
1,417,124 + MIT1002_01282 0.79 +0.6
1,417,124 - MIT1002_01282 0.79 -0.4
1,417,124 - MIT1002_01282 0.79 +1.2
1,417,124 - MIT1002_01282 0.79 -2.6
1,417,193 - MIT1002_01282 0.85 -0.9
1,417,212 + MIT1002_01282 0.87 +0.2
1,417,270 - -0.2
1,417,275 - +1.1
1,417,304 + -0.3
1,417,304 + +1.5
1,417,381 + +0.1
1,417,415 + MIT1002_01283 0.11 -0.4
1,417,498 + MIT1002_01283 0.24 +0.2
1,417,528 - MIT1002_01283 0.28 +0.7
1,417,600 + MIT1002_01283 0.39 -0.8
1,417,607 + MIT1002_01283 0.41 -0.4
1,417,619 - MIT1002_01283 0.42 -0.9
1,417,717 + MIT1002_01283 0.57 +0.4
1,417,726 - MIT1002_01283 0.59 +0.3
1,417,745 - MIT1002_01283 0.62 +0.5
1,417,750 - MIT1002_01283 0.63 -1.3
1,417,815 + MIT1002_01283 0.73 -0.4
1,417,821 + MIT1002_01283 0.73 +2.2
1,417,839 + MIT1002_01283 0.76 +0.3
1,417,849 + MIT1002_01283 0.78 -2.7
1,417,849 + MIT1002_01283 0.78 -1.1
1,417,857 - MIT1002_01283 0.79 +0.4
1,417,980 + +1.3
1,418,035 - +1.9
1,418,035 - +0.1
1,418,046 + +1.0
1,418,106 - MIT1002_01284 0.12 -0.7
1,418,113 + MIT1002_01284 0.12 -0.5
1,418,113 + MIT1002_01284 0.12 +0.6
1,418,113 + MIT1002_01284 0.12 +2.0
1,418,113 + MIT1002_01284 0.12 +1.0
1,418,113 + MIT1002_01284 0.12 -1.0
1,418,113 + MIT1002_01284 0.12 +1.2
1,418,113 + MIT1002_01284 0.12 -0.2
1,418,113 + MIT1002_01284 0.12 -0.6
1,418,113 + MIT1002_01284 0.12 +0.1
1,418,113 + MIT1002_01284 0.12 -1.2
1,418,121 - MIT1002_01284 0.13 -1.5
1,418,121 - MIT1002_01284 0.13 +0.1
1,418,121 - MIT1002_01284 0.13 -0.3
1,418,121 - MIT1002_01284 0.13 -0.5
1,418,121 - MIT1002_01284 0.13 +1.6
1,418,121 - MIT1002_01284 0.13 -1.3
1,418,207 - MIT1002_01284 0.22 -2.3
1,418,282 + MIT1002_01284 0.30 +0.6
1,418,286 - MIT1002_01284 0.30 +2.5
1,418,286 - MIT1002_01284 0.30 -0.8
1,418,318 + MIT1002_01284 0.33 +0.3
1,418,342 + MIT1002_01284 0.36 +0.7

Or see this region's nucleotide sequence