Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01060

Experiment: monoculture; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 2
1,170,217	+		MIT1002_01059	0.59	-0.1
1,170,260	+		MIT1002_01059	0.61	-0.7
1,170,338	+		MIT1002_01059	0.65	-0.5
1,170,354	-		MIT1002_01059	0.66	+0.1
1,170,356	-		MIT1002_01059	0.66	+1.0
1,170,385	+		MIT1002_01059	0.67	-0.4
1,170,388	+		MIT1002_01059	0.67	-0.3
1,170,434	+		MIT1002_01059	0.69	-1.1
1,170,494	+		MIT1002_01059	0.72	-0.1
1,170,502	-		MIT1002_01059	0.73	-0.7
1,170,506	-		MIT1002_01059	0.73	-0.1
1,170,702	+		MIT1002_01059	0.82	-0.5
1,170,711	+		MIT1002_01059	0.82	+0.3
1,170,711	+		MIT1002_01059	0.82	+0.4
1,170,711	+		MIT1002_01059	0.82	-0.6
1,170,719	-		MIT1002_01059	0.83	-0.7
1,170,719	-		MIT1002_01059	0.83	+0.4
1,170,719	-		MIT1002_01059	0.83	-0.4
1,170,719	-		MIT1002_01059	0.83	-0.2
1,170,729	-		MIT1002_01059	0.83	-0.0
1,170,748	-		MIT1002_01059	0.84	+0.9
1,170,763	+		MIT1002_01059	0.85	-0.0
1,170,771	-		MIT1002_01059	0.85	-1.5
1,170,796	+		MIT1002_01059	0.86	-0.8
1,170,807	+		MIT1002_01059	0.87	+0.7
1,170,812	+		MIT1002_01059	0.87	-0.2
1,170,870	+				+0.3
1,170,870	+				+0.3
1,170,907	+				+0.8
1,170,963	-				+0.5
1,170,984	-				-1.0
1,171,023	-				-0.9
1,171,070	+				+0.6
1,171,079	-				+0.5
1,171,080	+				-1.2
1,171,276	-				-0.7
1,171,365	-		MIT1002_01060	0.14	-1.0
1,171,365	-		MIT1002_01060	0.14	-0.1
1,171,365	-		MIT1002_01060	0.14	-0.4
1,171,439	+		MIT1002_01060	0.20	+0.4
1,171,467	+		MIT1002_01060	0.23	+0.8
1,171,480	+		MIT1002_01060	0.24	+0.4
1,171,485	+		MIT1002_01060	0.24	-2.8
1,171,485	+		MIT1002_01060	0.24	-0.3
1,171,494	+		MIT1002_01060	0.25	+1.1
1,171,521	+		MIT1002_01060	0.28	+0.7
1,171,572	-		MIT1002_01060	0.32	+0.1
1,171,583	-		MIT1002_01060	0.33	-0.7
1,171,641	-		MIT1002_01060	0.38	-2.6
1,171,641	-		MIT1002_01060	0.38	+2.0
1,171,652	+		MIT1002_01060	0.39	-0.4
1,171,657	+		MIT1002_01060	0.40	-1.2
1,171,657	+		MIT1002_01060	0.40	+0.7
1,171,660	-		MIT1002_01060	0.40	-0.1
1,171,660	-		MIT1002_01060	0.40	-0.7
1,171,660	-		MIT1002_01060	0.40	-0.4
1,171,665	-		MIT1002_01060	0.40	-0.9
1,171,665	-		MIT1002_01060	0.40	+0.7
1,171,763	-		MIT1002_01060	0.49	-1.7
1,171,765	-		MIT1002_01060	0.49	-0.2
1,171,803	+		MIT1002_01060	0.52	-2.9
1,171,811	-		MIT1002_01060	0.53	+0.7
1,171,977	+		MIT1002_01060	0.68	-0.9
1,171,977	+		MIT1002_01060	0.68	-0.1
1,171,977	+		MIT1002_01060	0.68	-2.0
1,171,977	+		MIT1002_01060	0.68	+0.2
1,171,977	+		MIT1002_01060	0.68	-1.6
1,171,978	-		MIT1002_01060	0.68	+0.5
1,171,978	-		MIT1002_01060	0.68	-1.6
1,171,985	-		MIT1002_01060	0.68	+0.6
1,171,985	-		MIT1002_01060	0.68	+0.7
1,171,985	-		MIT1002_01060	0.68	-1.3
1,172,173	+		MIT1002_01060	0.85	+0.2
1,172,181	-		MIT1002_01060	0.85	-1.1
1,172,308	-				+0.9
1,172,342	-				-0.2
1,172,414	-		MIT1002_01061	0.12	+0.5
1,172,493	-		MIT1002_01061	0.25	+0.7
1,172,579	-		MIT1002_01061	0.39	+0.0
1,172,592	+		MIT1002_01061	0.41	-1.7
1,172,651	-		MIT1002_01061	0.51	-0.2
1,172,651	-		MIT1002_01061	0.51	+0.4
1,172,651	-		MIT1002_01061	0.51	+0.5
1,172,665	+		MIT1002_01061	0.53	-0.5
1,172,692	+		MIT1002_01061	0.57	+0.4
1,172,785	-		MIT1002_01061	0.72	-0.4
1,172,845	+		MIT1002_01061	0.82	-0.2
1,172,855	+		MIT1002_01061	0.83	-1.7
1,172,879	+		MIT1002_01061	0.87	+0.7
1,172,892	+		MIT1002_01061	0.89	+0.7
1,172,937	-				-1.1
1,172,965	+				+0.3
1,172,965	+				+1.4
1,173,062	+		MIT1002_01062	0.13	+0.2
1,173,070	-		MIT1002_01062	0.14	-1.2
1,173,072	+		MIT1002_01062	0.15	-0.3
1,173,081	+		MIT1002_01062	0.16	-0.3
1,173,123	-		MIT1002_01062	0.22	+0.3
1,173,133	+		MIT1002_01062	0.23	+0.8
1,173,144	+		MIT1002_01062	0.25	+1.2
1,173,170	-		MIT1002_01062	0.28	-1.8
1,173,170	-		MIT1002_01062	0.28	+1.0
1,173,228	+		MIT1002_01062	0.37	-0.4
1,173,236	-		MIT1002_01062	0.38	-0.3
1,173,249	-		MIT1002_01062	0.40	-0.9
1,173,299	+		MIT1002_01062	0.47	-0.1
1,173,301	+		MIT1002_01062	0.47	+0.1