Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00653

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00652 and MIT1002_00653 overlap by 4 nucleotidesMIT1002_00653 and MIT1002_00654 overlap by 6 nucleotides MIT1002_00652: MIT1002_00652 - Chemotaxis protein CheY, at 707,637 to 708,707 _00652 MIT1002_00653: MIT1002_00653 - putative diguanylate cyclase AdrA, at 708,704 to 709,693 _00653 MIT1002_00654: MIT1002_00654 - Signal transduction histidine-protein kinase BarA, at 709,688 to 711,874 _00654 Position (kb) 708 709 710Strain fitness (log2 ratio) -2 -1 0 1 2at 707.704 kb on - strandat 707.745 kb on + strand, within MIT1002_00652at 707.772 kb on + strand, within MIT1002_00652at 707.772 kb on + strand, within MIT1002_00652at 707.780 kb on - strand, within MIT1002_00652at 707.780 kb on - strand, within MIT1002_00652at 707.895 kb on + strand, within MIT1002_00652at 707.897 kb on - strand, within MIT1002_00652at 707.920 kb on + strand, within MIT1002_00652at 707.979 kb on - strand, within MIT1002_00652at 707.985 kb on - strand, within MIT1002_00652at 708.155 kb on - strand, within MIT1002_00652at 708.227 kb on + strand, within MIT1002_00652at 708.227 kb on + strand, within MIT1002_00652at 708.297 kb on + strand, within MIT1002_00652at 708.297 kb on + strand, within MIT1002_00652at 708.305 kb on - strand, within MIT1002_00652at 708.436 kb on + strand, within MIT1002_00652at 708.464 kb on + strand, within MIT1002_00652at 708.509 kb on + strand, within MIT1002_00652at 708.509 kb on + strand, within MIT1002_00652at 708.509 kb on + strand, within MIT1002_00652at 708.517 kb on - strand, within MIT1002_00652at 708.519 kb on - strand, within MIT1002_00652at 708.548 kb on + strand, within MIT1002_00652at 708.550 kb on + strand, within MIT1002_00652at 708.556 kb on - strand, within MIT1002_00652at 708.556 kb on - strand, within MIT1002_00652at 708.568 kb on - strand, within MIT1002_00652at 708.655 kb on + strandat 708.655 kb on + strandat 708.663 kb on - strandat 708.700 kb on + strandat 708.770 kb on - strandat 708.788 kb on - strandat 708.829 kb on - strand, within MIT1002_00653at 708.938 kb on - strand, within MIT1002_00653at 708.955 kb on - strand, within MIT1002_00653at 709.022 kb on + strand, within MIT1002_00653at 709.027 kb on + strand, within MIT1002_00653at 709.147 kb on + strand, within MIT1002_00653at 709.155 kb on - strand, within MIT1002_00653at 709.174 kb on + strand, within MIT1002_00653at 709.219 kb on - strand, within MIT1002_00653at 709.287 kb on - strand, within MIT1002_00653at 709.369 kb on - strand, within MIT1002_00653at 709.369 kb on - strand, within MIT1002_00653at 709.374 kb on - strand, within MIT1002_00653at 709.510 kb on + strand, within MIT1002_00653at 709.518 kb on - strand, within MIT1002_00653at 709.568 kb on + strand, within MIT1002_00653at 709.614 kb on - strandat 709.685 kb on + strandat 709.688 kb on + strandat 709.688 kb on + strandat 709.693 kb on - strandat 709.701 kb on - strandat 709.713 kb on - strandat 709.720 kb on + strandat 709.720 kb on + strandat 709.728 kb on - strandat 709.728 kb on - strandat 709.728 kb on - strandat 709.750 kb on + strandat 709.753 kb on - strandat 709.789 kb on + strandat 709.822 kb on + strandat 709.830 kb on - strandat 709.944 kb on + strand, within MIT1002_00654at 709.944 kb on + strand, within MIT1002_00654at 709.952 kb on - strand, within MIT1002_00654at 709.952 kb on - strand, within MIT1002_00654at 710.066 kb on - strand, within MIT1002_00654at 710.074 kb on + strand, within MIT1002_00654at 710.082 kb on - strand, within MIT1002_00654at 710.102 kb on - strand, within MIT1002_00654at 710.137 kb on - strand, within MIT1002_00654at 710.174 kb on + strand, within MIT1002_00654at 710.235 kb on + strand, within MIT1002_00654at 710.245 kb on + strand, within MIT1002_00654at 710.245 kb on + strand, within MIT1002_00654at 710.253 kb on - strand, within MIT1002_00654at 710.307 kb on - strand, within MIT1002_00654at 710.335 kb on - strand, within MIT1002_00654at 710.335 kb on - strand, within MIT1002_00654at 710.338 kb on + strand, within MIT1002_00654at 710.377 kb on - strand, within MIT1002_00654at 710.400 kb on - strand, within MIT1002_00654at 710.426 kb on + strand, within MIT1002_00654at 710.440 kb on + strand, within MIT1002_00654at 710.448 kb on - strand, within MIT1002_00654at 710.462 kb on + strand, within MIT1002_00654at 710.464 kb on + strand, within MIT1002_00654at 710.470 kb on - strand, within MIT1002_00654at 710.472 kb on + strand, within MIT1002_00654at 710.517 kb on - strand, within MIT1002_00654at 710.520 kb on - strand, within MIT1002_00654at 710.597 kb on + strand, within MIT1002_00654at 710.620 kb on - strand, within MIT1002_00654at 710.630 kb on - strand, within MIT1002_00654

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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707,704 - +0.6
707,745 + MIT1002_00652 0.10 +0.1
707,772 + MIT1002_00652 0.13 -0.7
707,772 + MIT1002_00652 0.13 -0.5
707,780 - MIT1002_00652 0.13 -1.2
707,780 - MIT1002_00652 0.13 +0.2
707,895 + MIT1002_00652 0.24 -0.1
707,897 - MIT1002_00652 0.24 -0.7
707,920 + MIT1002_00652 0.26 -1.2
707,979 - MIT1002_00652 0.32 -0.0
707,985 - MIT1002_00652 0.32 -0.2
708,155 - MIT1002_00652 0.48 +0.1
708,227 + MIT1002_00652 0.55 +0.2
708,227 + MIT1002_00652 0.55 +0.5
708,297 + MIT1002_00652 0.62 -0.1
708,297 + MIT1002_00652 0.62 -2.1
708,305 - MIT1002_00652 0.62 -0.7
708,436 + MIT1002_00652 0.75 -0.5
708,464 + MIT1002_00652 0.77 -0.2
708,509 + MIT1002_00652 0.81 +0.8
708,509 + MIT1002_00652 0.81 +0.9
708,509 + MIT1002_00652 0.81 +1.9
708,517 - MIT1002_00652 0.82 -0.3
708,519 - MIT1002_00652 0.82 +0.1
708,548 + MIT1002_00652 0.85 +0.4
708,550 + MIT1002_00652 0.85 -1.2
708,556 - MIT1002_00652 0.86 +0.1
708,556 - MIT1002_00652 0.86 -2.4
708,568 - MIT1002_00652 0.87 +0.2
708,655 + -0.1
708,655 + -0.4
708,663 - -0.3
708,700 + +0.1
708,770 - +0.4
708,788 - -0.9
708,829 - MIT1002_00653 0.13 -1.4
708,938 - MIT1002_00653 0.24 +0.0
708,955 - MIT1002_00653 0.25 -0.3
709,022 + MIT1002_00653 0.32 -0.4
709,027 + MIT1002_00653 0.33 +0.5
709,147 + MIT1002_00653 0.45 +0.9
709,155 - MIT1002_00653 0.46 -0.1
709,174 + MIT1002_00653 0.47 -0.2
709,219 - MIT1002_00653 0.52 +0.2
709,287 - MIT1002_00653 0.59 -0.9
709,369 - MIT1002_00653 0.67 -0.4
709,369 - MIT1002_00653 0.67 +1.1
709,374 - MIT1002_00653 0.68 -1.9
709,510 + MIT1002_00653 0.81 -0.6
709,518 - MIT1002_00653 0.82 -1.0
709,568 + MIT1002_00653 0.87 -0.2
709,614 - -0.8
709,685 + +1.9
709,688 + -0.4
709,688 + +1.0
709,693 - -0.9
709,701 - -0.1
709,713 - -1.4
709,720 + -0.4
709,720 + +1.1
709,728 - -0.2
709,728 - +0.9
709,728 - +0.4
709,750 + +0.5
709,753 - -0.1
709,789 + +0.1
709,822 + +0.4
709,830 - -0.2
709,944 + MIT1002_00654 0.12 +0.6
709,944 + MIT1002_00654 0.12 +0.2
709,952 - MIT1002_00654 0.12 +0.6
709,952 - MIT1002_00654 0.12 +0.7
710,066 - MIT1002_00654 0.17 +0.1
710,074 + MIT1002_00654 0.18 -1.4
710,082 - MIT1002_00654 0.18 +0.7
710,102 - MIT1002_00654 0.19 -0.1
710,137 - MIT1002_00654 0.21 +0.0
710,174 + MIT1002_00654 0.22 +0.3
710,235 + MIT1002_00654 0.25 +0.7
710,245 + MIT1002_00654 0.25 -0.9
710,245 + MIT1002_00654 0.25 +0.1
710,253 - MIT1002_00654 0.26 -0.2
710,307 - MIT1002_00654 0.28 -0.2
710,335 - MIT1002_00654 0.30 -2.1
710,335 - MIT1002_00654 0.30 +0.4
710,338 + MIT1002_00654 0.30 -0.3
710,377 - MIT1002_00654 0.32 +0.4
710,400 - MIT1002_00654 0.33 +0.4
710,426 + MIT1002_00654 0.34 +0.9
710,440 + MIT1002_00654 0.34 +0.6
710,448 - MIT1002_00654 0.35 +0.5
710,462 + MIT1002_00654 0.35 -0.3
710,464 + MIT1002_00654 0.35 -0.5
710,470 - MIT1002_00654 0.36 +1.0
710,472 + MIT1002_00654 0.36 +0.2
710,517 - MIT1002_00654 0.38 -0.0
710,520 - MIT1002_00654 0.38 +0.5
710,597 + MIT1002_00654 0.42 +1.4
710,620 - MIT1002_00654 0.43 +1.3
710,630 - MIT1002_00654 0.43 -0.6

Or see this region's nucleotide sequence