Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00601 and MIT1002_00602 are separated by 413 nucleotides MIT1002_00602 and MIT1002_00603 are separated by 27 nucleotides MIT1002_00603 and MIT1002_00604 are separated by 20 nucleotides MIT1002_00604 and MIT1002_00605 overlap by 11 nucleotides
MIT1002_00601: MIT1002_00601 - hypothetical protein, at 653,230 to 654,849
_00601
MIT1002_00602: MIT1002_00602 - hypothetical protein, at 655,263 to 655,595
_00602
MIT1002_00603: MIT1002_00603 - hypothetical protein, at 655,623 to 656,162
_00603
MIT1002_00604: MIT1002_00604 - hypothetical protein, at 656,183 to 656,878
_00604
MIT1002_00605: MIT1002_00605 - Cation efflux system protein CzcA, at 656,868 to 660,011
_00605
Position (kb) 655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 654.623 kb on - strand, within MIT1002_00601 at 654.682 kb on - strand, within MIT1002_00601 at 654.693 kb on - strand at 654.693 kb on - strand at 654.711 kb on - strand at 654.717 kb on + strand at 654.720 kb on + strand at 654.730 kb on + strand at 654.738 kb on - strand at 654.796 kb on + strand at 654.919 kb on + strand at 655.014 kb on + strand at 655.036 kb on - strand at 655.036 kb on - strand at 655.054 kb on + strand at 655.102 kb on - strand at 655.102 kb on - strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.124 kb on + strand at 655.153 kb on + strand at 655.224 kb on + strand at 655.228 kb on + strand at 655.232 kb on - strand at 655.232 kb on - strand at 655.244 kb on - strand at 655.247 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.253 kb on + strand at 655.261 kb on - strand at 655.261 kb on - strand at 655.281 kb on - strand at 655.352 kb on + strand, within MIT1002_00602 at 655.574 kb on - strand at 655.629 kb on + strand at 655.675 kb on + strand at 655.675 kb on + strand at 655.675 kb on + strand at 655.683 kb on - strand, within MIT1002_00603 at 655.730 kb on + strand, within MIT1002_00603 at 655.738 kb on - strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.754 kb on + strand, within MIT1002_00603 at 655.771 kb on + strand, within MIT1002_00603 at 655.774 kb on - strand, within MIT1002_00603 at 655.827 kb on + strand, within MIT1002_00603 at 655.840 kb on + strand, within MIT1002_00603 at 655.893 kb on + strand, within MIT1002_00603 at 656.030 kb on + strand, within MIT1002_00603 at 656.138 kb on - strand at 656.214 kb on - strand at 656.237 kb on + strand at 656.245 kb on - strand at 656.255 kb on - strand, within MIT1002_00604 at 656.255 kb on - strand, within MIT1002_00604 at 656.311 kb on + strand, within MIT1002_00604 at 656.323 kb on - strand, within MIT1002_00604 at 656.336 kb on + strand, within MIT1002_00604 at 656.341 kb on + strand, within MIT1002_00604 at 656.341 kb on + strand, within MIT1002_00604 at 656.341 kb on + strand, within MIT1002_00604 at 656.341 kb on + strand, within MIT1002_00604 at 656.349 kb on - strand, within MIT1002_00604 at 656.349 kb on - strand, within MIT1002_00604 at 656.349 kb on - strand, within MIT1002_00604 at 656.422 kb on + strand, within MIT1002_00604 at 656.447 kb on + strand, within MIT1002_00604 at 656.447 kb on + strand, within MIT1002_00604 at 656.452 kb on + strand, within MIT1002_00604 at 656.455 kb on - strand, within MIT1002_00604 at 656.455 kb on - strand, within MIT1002_00604 at 656.455 kb on - strand, within MIT1002_00604 at 656.457 kb on + strand, within MIT1002_00604 at 656.562 kb on + strand, within MIT1002_00604 at 656.594 kb on + strand, within MIT1002_00604 at 656.594 kb on + strand, within MIT1002_00604 at 656.594 kb on + strand, within MIT1002_00604 at 656.602 kb on - strand, within MIT1002_00604 at 656.602 kb on - strand, within MIT1002_00604 at 656.644 kb on - strand, within MIT1002_00604 at 656.646 kb on - strand, within MIT1002_00604 at 656.748 kb on - strand, within MIT1002_00604 at 656.762 kb on - strand, within MIT1002_00604 at 656.809 kb on + strand at 656.819 kb on + strand at 656.819 kb on + strand at 656.824 kb on + strand at 656.868 kb on + strand at 656.894 kb on - strand at 656.954 kb on - strand at 656.963 kb on + strand at 656.963 kb on + strand at 657.031 kb on - strand at 657.075 kb on + strand at 657.087 kb on + strand at 657.095 kb on - strand at 657.095 kb on - strand at 657.095 kb on - strand at 657.108 kb on + strand at 657.134 kb on + strand at 657.134 kb on + strand at 657.142 kb on - strand at 657.142 kb on - strand at 657.142 kb on - strand at 657.148 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 654,623 - MIT1002_00601 0.86 +0.7 654,682 - MIT1002_00601 0.90 -2.2 654,693 - +0.2 654,693 - +0.4 654,711 - +0.9 654,717 + -0.8 654,720 + +0.1 654,730 + +0.7 654,738 - +0.0 654,796 + +0.3 654,919 + -1.5 655,014 + -0.7 655,036 - +0.6 655,036 - +0.1 655,054 + -0.7 655,102 - -0.7 655,102 - +0.5 655,124 + +0.2 655,124 + -0.3 655,124 + -1.5 655,124 + -1.1 655,153 + +0.2 655,224 + -0.1 655,228 + +0.3 655,232 - -1.5 655,232 - -0.8 655,244 - -0.3 655,247 + -1.1 655,253 + +0.2 655,253 + -1.5 655,253 + -0.2 655,253 + -0.5 655,261 - +1.0 655,261 - -0.2 655,281 - +0.3 655,352 + MIT1002_00602 0.27 -0.2 655,574 - +0.3 655,629 + -0.2 655,675 + +0.7 655,675 + +0.4 655,675 + +0.2 655,683 - MIT1002_00603 0.11 -0.4 655,730 + MIT1002_00603 0.20 -0.5 655,738 - MIT1002_00603 0.21 +0.8 655,754 + MIT1002_00603 0.24 +8.3 655,754 + MIT1002_00603 0.24 -2.8 655,754 + MIT1002_00603 0.24 +1.8 655,771 + MIT1002_00603 0.27 +0.4 655,774 - MIT1002_00603 0.28 -1.3 655,827 + MIT1002_00603 0.38 -0.7 655,840 + MIT1002_00603 0.40 +0.2 655,893 + MIT1002_00603 0.50 +0.4 656,030 + MIT1002_00603 0.75 -0.7 656,138 - -0.6 656,214 - +1.3 656,237 + +0.5 656,245 - +0.8 656,255 - MIT1002_00604 0.10 +1.7 656,255 - MIT1002_00604 0.10 -0.6 656,311 + MIT1002_00604 0.18 +1.3 656,323 - MIT1002_00604 0.20 +0.4 656,336 + MIT1002_00604 0.22 -0.2 656,341 + MIT1002_00604 0.23 +1.7 656,341 + MIT1002_00604 0.23 +0.5 656,341 + MIT1002_00604 0.23 +0.5 656,341 + MIT1002_00604 0.23 +0.0 656,349 - MIT1002_00604 0.24 -1.0 656,349 - MIT1002_00604 0.24 -0.2 656,349 - MIT1002_00604 0.24 +0.1 656,422 + MIT1002_00604 0.34 -0.1 656,447 + MIT1002_00604 0.38 +0.7 656,447 + MIT1002_00604 0.38 +0.1 656,452 + MIT1002_00604 0.39 +0.1 656,455 - MIT1002_00604 0.39 -0.1 656,455 - MIT1002_00604 0.39 -0.8 656,455 - MIT1002_00604 0.39 -0.3 656,457 + MIT1002_00604 0.39 -0.1 656,562 + MIT1002_00604 0.54 +0.4 656,594 + MIT1002_00604 0.59 -1.9 656,594 + MIT1002_00604 0.59 +0.1 656,594 + MIT1002_00604 0.59 +2.4 656,602 - MIT1002_00604 0.60 +0.9 656,602 - MIT1002_00604 0.60 +0.8 656,644 - MIT1002_00604 0.66 -0.3 656,646 - MIT1002_00604 0.67 +0.7 656,748 - MIT1002_00604 0.81 +0.5 656,762 - MIT1002_00604 0.83 +0.7 656,809 + -0.7 656,819 + -0.6 656,819 + +0.3 656,824 + +0.3 656,868 + +0.2 656,894 - -0.9 656,954 - -0.6 656,963 + -0.1 656,963 + +1.0 657,031 - -0.4 657,075 + -0.0 657,087 + -0.4 657,095 - -1.3 657,095 - +0.2 657,095 - +1.6 657,108 + +0.2 657,134 + +0.8 657,134 + -0.8 657,142 - +0.7 657,142 - -0.7 657,142 - -0.4 657,148 + -0.0
Or see this region's nucleotide sequence