Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00593

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00592 and MIT1002_00593 are separated by 8 nucleotidesMIT1002_00593 and MIT1002_00594 are separated by 26 nucleotides MIT1002_00592: MIT1002_00592 - hypothetical protein, at 639,379 to 640,584 _00592 MIT1002_00593: MIT1002_00593 - Type I restriction enzyme EcoR124II R protein, at 640,593 to 643,706 _00593 MIT1002_00594: MIT1002_00594 - hypothetical protein, at 643,733 to 644,767 _00594 Position (kb) 640 641 642 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 639.723 kb on + strand, within MIT1002_00592at 639.765 kb on + strand, within MIT1002_00592at 639.780 kb on - strand, within MIT1002_00592at 639.929 kb on - strand, within MIT1002_00592at 640.060 kb on + strand, within MIT1002_00592at 640.161 kb on + strand, within MIT1002_00592at 640.169 kb on - strand, within MIT1002_00592at 640.169 kb on - strand, within MIT1002_00592at 640.211 kb on - strand, within MIT1002_00592at 640.212 kb on + strand, within MIT1002_00592at 640.240 kb on + strand, within MIT1002_00592at 640.247 kb on + strand, within MIT1002_00592at 640.248 kb on - strand, within MIT1002_00592at 640.255 kb on - strand, within MIT1002_00592at 640.268 kb on - strand, within MIT1002_00592at 640.381 kb on - strand, within MIT1002_00592at 640.399 kb on - strand, within MIT1002_00592at 640.399 kb on - strand, within MIT1002_00592at 640.419 kb on + strand, within MIT1002_00592at 640.419 kb on + strand, within MIT1002_00592at 640.425 kb on + strand, within MIT1002_00592at 640.427 kb on - strand, within MIT1002_00592at 640.433 kb on - strand, within MIT1002_00592at 640.500 kb on + strandat 640.506 kb on - strandat 640.564 kb on + strandat 640.571 kb on + strandat 640.571 kb on + strandat 640.643 kb on - strandat 640.668 kb on + strandat 640.739 kb on - strandat 640.872 kb on - strandat 640.890 kb on + strandat 640.906 kb on - strand, within MIT1002_00593at 640.907 kb on - strand, within MIT1002_00593at 640.959 kb on - strand, within MIT1002_00593at 641.026 kb on - strand, within MIT1002_00593at 641.029 kb on + strand, within MIT1002_00593at 641.201 kb on + strand, within MIT1002_00593at 641.513 kb on + strand, within MIT1002_00593at 641.688 kb on - strand, within MIT1002_00593at 641.951 kb on + strand, within MIT1002_00593at 641.963 kb on + strand, within MIT1002_00593at 641.979 kb on - strand, within MIT1002_00593at 642.034 kb on - strand, within MIT1002_00593at 642.055 kb on - strand, within MIT1002_00593at 642.083 kb on + strand, within MIT1002_00593at 642.182 kb on + strand, within MIT1002_00593at 642.211 kb on - strand, within MIT1002_00593at 642.229 kb on + strand, within MIT1002_00593at 642.232 kb on - strand, within MIT1002_00593at 642.290 kb on - strand, within MIT1002_00593at 642.314 kb on - strand, within MIT1002_00593at 642.375 kb on + strand, within MIT1002_00593at 642.451 kb on - strand, within MIT1002_00593at 642.451 kb on - strand, within MIT1002_00593at 642.451 kb on - strand, within MIT1002_00593at 642.455 kb on + strand, within MIT1002_00593at 642.558 kb on + strand, within MIT1002_00593at 642.590 kb on + strand, within MIT1002_00593at 642.591 kb on + strand, within MIT1002_00593at 642.784 kb on + strand, within MIT1002_00593at 642.805 kb on + strand, within MIT1002_00593at 642.891 kb on - strand, within MIT1002_00593at 642.932 kb on + strand, within MIT1002_00593at 643.006 kb on + strand, within MIT1002_00593at 643.014 kb on - strand, within MIT1002_00593at 643.065 kb on - strand, within MIT1002_00593at 643.189 kb on - strand, within MIT1002_00593at 643.203 kb on + strand, within MIT1002_00593at 643.320 kb on + strand, within MIT1002_00593at 643.545 kb on + strandat 643.679 kb on + strandat 643.679 kb on + strandat 643.686 kb on + strandat 643.687 kb on - strandat 643.687 kb on - strandat 643.694 kb on - strandat 643.700 kb on + strandat 643.700 kb on + strandat 643.700 kb on + strandat 643.731 kb on - strandat 643.756 kb on + strandat 643.823 kb on - strandat 643.872 kb on + strand, within MIT1002_00594at 643.914 kb on + strand, within MIT1002_00594at 643.959 kb on + strand, within MIT1002_00594at 643.967 kb on - strand, within MIT1002_00594at 644.001 kb on - strand, within MIT1002_00594at 644.071 kb on + strand, within MIT1002_00594at 644.129 kb on + strand, within MIT1002_00594at 644.129 kb on + strand, within MIT1002_00594at 644.137 kb on - strand, within MIT1002_00594at 644.137 kb on - strand, within MIT1002_00594at 644.137 kb on - strand, within MIT1002_00594at 644.137 kb on - strand, within MIT1002_00594at 644.403 kb on + strand, within MIT1002_00594at 644.403 kb on + strand, within MIT1002_00594at 644.416 kb on + strand, within MIT1002_00594at 644.438 kb on - strand, within MIT1002_00594at 644.466 kb on + strand, within MIT1002_00594at 644.474 kb on - strand, within MIT1002_00594

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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639,723 + MIT1002_00592 0.29 -2.0
639,765 + MIT1002_00592 0.32 -0.5
639,780 - MIT1002_00592 0.33 -0.1
639,929 - MIT1002_00592 0.46 +0.2
640,060 + MIT1002_00592 0.56 +2.0
640,161 + MIT1002_00592 0.65 +0.2
640,169 - MIT1002_00592 0.66 +0.3
640,169 - MIT1002_00592 0.66 +1.6
640,211 - MIT1002_00592 0.69 -0.2
640,212 + MIT1002_00592 0.69 -0.0
640,240 + MIT1002_00592 0.71 -0.1
640,247 + MIT1002_00592 0.72 +1.9
640,248 - MIT1002_00592 0.72 +0.0
640,255 - MIT1002_00592 0.73 -0.3
640,268 - MIT1002_00592 0.74 -0.5
640,381 - MIT1002_00592 0.83 +0.4
640,399 - MIT1002_00592 0.85 +0.5
640,399 - MIT1002_00592 0.85 -0.8
640,419 + MIT1002_00592 0.86 +0.3
640,419 + MIT1002_00592 0.86 +0.3
640,425 + MIT1002_00592 0.87 +0.6
640,427 - MIT1002_00592 0.87 +1.0
640,433 - MIT1002_00592 0.87 -0.0
640,500 + +1.2
640,506 - -0.5
640,564 + -0.3
640,571 + +0.4
640,571 + -1.2
640,643 - +0.2
640,668 + -1.0
640,739 - +0.9
640,872 - -0.5
640,890 + -0.3
640,906 - MIT1002_00593 0.10 +0.5
640,907 - MIT1002_00593 0.10 +0.0
640,959 - MIT1002_00593 0.12 -0.1
641,026 - MIT1002_00593 0.14 +0.6
641,029 + MIT1002_00593 0.14 -0.9
641,201 + MIT1002_00593 0.20 +0.6
641,513 + MIT1002_00593 0.30 -2.1
641,688 - MIT1002_00593 0.35 -1.4
641,951 + MIT1002_00593 0.44 +0.7
641,963 + MIT1002_00593 0.44 -0.1
641,979 - MIT1002_00593 0.45 -0.8
642,034 - MIT1002_00593 0.46 -0.3
642,055 - MIT1002_00593 0.47 -0.8
642,083 + MIT1002_00593 0.48 -0.4
642,182 + MIT1002_00593 0.51 -2.0
642,211 - MIT1002_00593 0.52 +0.7
642,229 + MIT1002_00593 0.53 +0.2
642,232 - MIT1002_00593 0.53 -0.7
642,290 - MIT1002_00593 0.54 +0.2
642,314 - MIT1002_00593 0.55 -0.8
642,375 + MIT1002_00593 0.57 -3.0
642,451 - MIT1002_00593 0.60 -1.3
642,451 - MIT1002_00593 0.60 -0.4
642,451 - MIT1002_00593 0.60 -1.2
642,455 + MIT1002_00593 0.60 -1.4
642,558 + MIT1002_00593 0.63 +2.0
642,590 + MIT1002_00593 0.64 -0.9
642,591 + MIT1002_00593 0.64 +1.5
642,784 + MIT1002_00593 0.70 +0.9
642,805 + MIT1002_00593 0.71 -0.0
642,891 - MIT1002_00593 0.74 -0.3
642,932 + MIT1002_00593 0.75 +0.9
643,006 + MIT1002_00593 0.77 -1.6
643,014 - MIT1002_00593 0.78 -1.3
643,065 - MIT1002_00593 0.79 -2.1
643,189 - MIT1002_00593 0.83 +0.2
643,203 + MIT1002_00593 0.84 +1.1
643,320 + MIT1002_00593 0.88 +0.7
643,545 + +0.4
643,679 + -0.5
643,679 + -0.6
643,686 + -0.7
643,687 - -0.3
643,687 - +0.8
643,694 - -0.1
643,700 + +1.5
643,700 + +0.2
643,700 + +2.7
643,731 - +1.5
643,756 + -1.5
643,823 - +1.0
643,872 + MIT1002_00594 0.13 +0.4
643,914 + MIT1002_00594 0.17 -0.0
643,959 + MIT1002_00594 0.22 +2.0
643,967 - MIT1002_00594 0.23 +1.1
644,001 - MIT1002_00594 0.26 -0.1
644,071 + MIT1002_00594 0.33 +0.2
644,129 + MIT1002_00594 0.38 -0.4
644,129 + MIT1002_00594 0.38 -1.0
644,137 - MIT1002_00594 0.39 -0.5
644,137 - MIT1002_00594 0.39 -0.1
644,137 - MIT1002_00594 0.39 +0.1
644,137 - MIT1002_00594 0.39 +1.3
644,403 + MIT1002_00594 0.65 +0.3
644,403 + MIT1002_00594 0.65 +0.7
644,416 + MIT1002_00594 0.66 +0.6
644,438 - MIT1002_00594 0.68 +0.5
644,466 + MIT1002_00594 0.71 +0.5
644,474 - MIT1002_00594 0.72 -0.6

Or see this region's nucleotide sequence