Experiment: monoculture; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00522 and MIT1002_00523 are separated by 60 nucleotides MIT1002_00523 and MIT1002_00524 are separated by 66 nucleotides MIT1002_00524 and MIT1002_00525 are separated by 186 nucleotides
MIT1002_00522: MIT1002_00522 - N5-carboxyaminoimidazole ribonucleotide synthase, at 568,772 to 569,908
_00522
MIT1002_00523: MIT1002_00523 - tRNA-Thr, at 569,969 to 570,044
_00523
MIT1002_00524: MIT1002_00524 - hypothetical protein, at 570,111 to 570,656
_00524
MIT1002_00525: MIT1002_00525 - DNA protection during starvation protein 2, at 570,843 to 571,316
_00525
Position (kb) 569
570
571 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 568.978 kb on - strand, within MIT1002_00522 at 569.020 kb on - strand, within MIT1002_00522 at 569.157 kb on + strand, within MIT1002_00522 at 569.332 kb on + strand, within MIT1002_00522 at 569.364 kb on - strand, within MIT1002_00522 at 569.366 kb on - strand, within MIT1002_00522 at 569.366 kb on - strand, within MIT1002_00522 at 569.398 kb on - strand, within MIT1002_00522 at 569.449 kb on + strand, within MIT1002_00522 at 569.479 kb on + strand, within MIT1002_00522 at 569.480 kb on + strand, within MIT1002_00522 at 569.488 kb on - strand, within MIT1002_00522 at 569.515 kb on + strand, within MIT1002_00522 at 569.523 kb on - strand, within MIT1002_00522 at 569.576 kb on - strand, within MIT1002_00522 at 569.724 kb on + strand, within MIT1002_00522 at 569.732 kb on - strand, within MIT1002_00522 at 569.738 kb on + strand, within MIT1002_00522 at 569.738 kb on + strand, within MIT1002_00522 at 569.858 kb on + strand at 569.866 kb on - strand at 570.089 kb on - strand at 570.178 kb on - strand, within MIT1002_00524 at 570.279 kb on + strand, within MIT1002_00524 at 570.279 kb on + strand, within MIT1002_00524 at 570.293 kb on + strand, within MIT1002_00524 at 570.294 kb on + strand, within MIT1002_00524 at 570.323 kb on + strand, within MIT1002_00524 at 570.333 kb on - strand, within MIT1002_00524 at 570.338 kb on + strand, within MIT1002_00524 at 570.363 kb on - strand, within MIT1002_00524 at 570.493 kb on + strand, within MIT1002_00524 at 570.536 kb on - strand, within MIT1002_00524 at 570.549 kb on - strand, within MIT1002_00524 at 570.564 kb on + strand, within MIT1002_00524 at 570.589 kb on + strand, within MIT1002_00524 at 570.604 kb on - strand at 570.719 kb on + strand at 570.826 kb on + strand at 570.828 kb on + strand at 570.834 kb on + strand at 570.842 kb on - strand at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.012 kb on + strand, within MIT1002_00525 at 571.012 kb on + strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2 remove 568,978 - MIT1002_00522 0.18 -3.9 569,020 - MIT1002_00522 0.22 -5.1 569,157 + MIT1002_00522 0.34 -4.2 569,332 + MIT1002_00522 0.49 -5.6 569,364 - MIT1002_00522 0.52 -0.6 569,366 - MIT1002_00522 0.52 -1.6 569,366 - MIT1002_00522 0.52 -3.2 569,398 - MIT1002_00522 0.55 -4.5 569,449 + MIT1002_00522 0.60 -4.7 569,479 + MIT1002_00522 0.62 -2.8 569,480 + MIT1002_00522 0.62 -2.4 569,488 - MIT1002_00522 0.63 -3.9 569,515 + MIT1002_00522 0.65 -6.5 569,523 - MIT1002_00522 0.66 -4.2 569,576 - MIT1002_00522 0.71 -3.7 569,724 + MIT1002_00522 0.84 -1.8 569,732 - MIT1002_00522 0.84 -0.9 569,738 + MIT1002_00522 0.85 -5.4 569,738 + MIT1002_00522 0.85 -6.8 569,858 + -5.2 569,866 - -2.2 570,089 - +0.1 570,178 - MIT1002_00524 0.12 -0.7 570,279 + MIT1002_00524 0.31 +0.3 570,279 + MIT1002_00524 0.31 -1.0 570,293 + MIT1002_00524 0.33 -1.6 570,294 + MIT1002_00524 0.34 +0.5 570,323 + MIT1002_00524 0.39 +1.3 570,333 - MIT1002_00524 0.41 -0.4 570,338 + MIT1002_00524 0.42 -0.2 570,363 - MIT1002_00524 0.46 -0.1 570,493 + MIT1002_00524 0.70 -1.1 570,536 - MIT1002_00524 0.78 -1.3 570,549 - MIT1002_00524 0.80 -4.2 570,564 + MIT1002_00524 0.83 -1.6 570,589 + MIT1002_00524 0.88 +0.7 570,604 - -1.4 570,719 + +0.9 570,826 + -0.8 570,828 + -0.6 570,834 + +0.6 570,842 - -0.9 571,007 + MIT1002_00525 0.35 +0.6 571,007 + MIT1002_00525 0.35 +1.4 571,007 + MIT1002_00525 0.35 -1.1 571,007 + MIT1002_00525 0.35 +0.3 571,012 + MIT1002_00525 0.36 -1.5 571,012 + MIT1002_00525 0.36 +1.1 571,015 - MIT1002_00525 0.36 -0.8 571,015 - MIT1002_00525 0.36 -0.2 571,015 - MIT1002_00525 0.36 +1.0
Or see this region's nucleotide sequence