Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00271

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00269 and MIT1002_00270 overlap by 4 nucleotidesMIT1002_00270 and MIT1002_00271 are separated by 12 nucleotidesMIT1002_00271 and MIT1002_00272 are separated by 14 nucleotidesMIT1002_00272 and MIT1002_00273 overlap by 4 nucleotides MIT1002_00269: MIT1002_00269 - hypothetical protein, at 295,558 to 296,316 _00269 MIT1002_00270: MIT1002_00270 - Class III cytochrome C family protein, at 296,313 to 297,107 _00270 MIT1002_00271: MIT1002_00271 - hypothetical protein, at 297,120 to 298,343 _00271 MIT1002_00272: MIT1002_00272 - Hydrogenase 2 maturation protease, at 298,358 to 298,912 _00272 MIT1002_00273: MIT1002_00273 - hypothetical protein, at 298,909 to 299,343 _00273 Position (kb) 297 298 299Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 296.134 kb on + strand, within MIT1002_00269at 296.170 kb on + strand, within MIT1002_00269at 296.178 kb on - strand, within MIT1002_00269at 296.178 kb on - strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.206 kb on - strand, within MIT1002_00269at 296.302 kb on - strandat 296.307 kb on - strandat 296.309 kb on + strandat 296.309 kb on + strandat 296.358 kb on - strandat 296.385 kb on + strandat 296.385 kb on + strandat 296.393 kb on - strand, within MIT1002_00270at 296.445 kb on + strand, within MIT1002_00270at 296.495 kb on - strand, within MIT1002_00270at 296.617 kb on - strand, within MIT1002_00270at 296.758 kb on + strand, within MIT1002_00270at 296.760 kb on + strand, within MIT1002_00270at 296.773 kb on - strand, within MIT1002_00270at 296.781 kb on + strand, within MIT1002_00270at 296.786 kb on + strand, within MIT1002_00270at 296.787 kb on - strand, within MIT1002_00270at 296.836 kb on - strand, within MIT1002_00270at 296.863 kb on - strand, within MIT1002_00270at 296.876 kb on + strand, within MIT1002_00270at 296.876 kb on + strand, within MIT1002_00270at 296.889 kb on + strand, within MIT1002_00270at 297.043 kb on + strandat 297.101 kb on + strandat 297.101 kb on + strandat 297.101 kb on + strandat 297.109 kb on - strandat 297.148 kb on + strandat 297.168 kb on + strandat 297.176 kb on - strandat 297.222 kb on - strandat 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.307 kb on - strand, within MIT1002_00271at 297.307 kb on - strand, within MIT1002_00271at 297.317 kb on - strand, within MIT1002_00271at 297.353 kb on + strand, within MIT1002_00271at 297.447 kb on + strand, within MIT1002_00271at 297.539 kb on + strand, within MIT1002_00271at 297.539 kb on + strand, within MIT1002_00271at 297.581 kb on + strand, within MIT1002_00271at 297.589 kb on - strand, within MIT1002_00271at 297.589 kb on - strand, within MIT1002_00271at 297.607 kb on + strand, within MIT1002_00271at 297.615 kb on - strand, within MIT1002_00271at 297.622 kb on - strand, within MIT1002_00271at 297.636 kb on - strand, within MIT1002_00271at 297.694 kb on + strand, within MIT1002_00271at 297.744 kb on + strand, within MIT1002_00271at 297.752 kb on - strand, within MIT1002_00271at 297.774 kb on + strand, within MIT1002_00271at 297.789 kb on - strand, within MIT1002_00271at 297.796 kb on + strand, within MIT1002_00271at 297.803 kb on + strand, within MIT1002_00271at 297.806 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.882 kb on - strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.896 kb on - strand, within MIT1002_00271at 297.948 kb on + strand, within MIT1002_00271at 297.955 kb on + strand, within MIT1002_00271at 297.955 kb on + strand, within MIT1002_00271at 298.034 kb on - strand, within MIT1002_00271at 298.034 kb on - strand, within MIT1002_00271at 298.126 kb on + strand, within MIT1002_00271at 298.171 kb on + strand, within MIT1002_00271at 298.224 kb on + strandat 298.248 kb on - strandat 298.248 kb on - strandat 298.248 kb on - strandat 298.332 kb on + strandat 298.347 kb on + strandat 298.445 kb on - strand, within MIT1002_00272at 298.484 kb on + strand, within MIT1002_00272at 298.492 kb on - strand, within MIT1002_00272at 298.503 kb on - strand, within MIT1002_00272at 298.528 kb on + strand, within MIT1002_00272at 298.550 kb on + strand, within MIT1002_00272at 298.569 kb on - strand, within MIT1002_00272at 298.606 kb on - strand, within MIT1002_00272at 298.676 kb on + strand, within MIT1002_00272at 298.734 kb on + strand, within MIT1002_00272at 298.818 kb on - strand, within MIT1002_00272at 298.869 kb on + strandat 298.901 kb on - strandat 298.969 kb on + strand, within MIT1002_00273at 298.998 kb on - strand, within MIT1002_00273at 299.098 kb on - strand, within MIT1002_00273at 299.100 kb on + strand, within MIT1002_00273at 299.108 kb on - strand, within MIT1002_00273at 299.108 kb on - strand, within MIT1002_00273at 299.124 kb on + strand, within MIT1002_00273at 299.126 kb on + strand, within MIT1002_00273at 299.161 kb on - strand, within MIT1002_00273at 299.225 kb on - strand, within MIT1002_00273at 299.236 kb on - strand, within MIT1002_00273at 299.262 kb on - strand, within MIT1002_00273at 299.276 kb on + strand, within MIT1002_00273at 299.282 kb on - strand, within MIT1002_00273at 299.329 kb on + strandat 299.329 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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296,134 + MIT1002_00269 0.76 +0.8
296,170 + MIT1002_00269 0.81 -2.3
296,178 - MIT1002_00269 0.82 -0.7
296,178 - MIT1002_00269 0.82 -1.6
296,205 + MIT1002_00269 0.85 -0.1
296,205 + MIT1002_00269 0.85 +0.9
296,205 + MIT1002_00269 0.85 +0.5
296,205 + MIT1002_00269 0.85 -0.0
296,206 - MIT1002_00269 0.85 +0.6
296,302 - -0.3
296,307 - -0.8
296,309 + +0.6
296,309 + +0.0
296,358 - +0.3
296,385 + +1.3
296,385 + -0.3
296,393 - MIT1002_00270 0.10 -0.6
296,445 + MIT1002_00270 0.17 -1.2
296,495 - MIT1002_00270 0.23 -0.1
296,617 - MIT1002_00270 0.38 +0.3
296,758 + MIT1002_00270 0.56 -0.8
296,760 + MIT1002_00270 0.56 +0.2
296,773 - MIT1002_00270 0.58 +1.0
296,781 + MIT1002_00270 0.59 -0.3
296,786 + MIT1002_00270 0.59 +0.2
296,787 - MIT1002_00270 0.60 +0.6
296,836 - MIT1002_00270 0.66 -0.5
296,863 - MIT1002_00270 0.69 -0.4
296,876 + MIT1002_00270 0.71 +0.2
296,876 + MIT1002_00270 0.71 +0.2
296,889 + MIT1002_00270 0.72 +0.5
297,043 + -0.2
297,101 + -0.8
297,101 + -0.0
297,101 + -0.1
297,109 - -0.2
297,148 + +0.7
297,168 + -0.9
297,176 - +0.6
297,222 - +0.2
297,299 + MIT1002_00271 0.15 +1.7
297,299 + MIT1002_00271 0.15 +0.1
297,299 + MIT1002_00271 0.15 +0.2
297,299 + MIT1002_00271 0.15 -1.5
297,299 + MIT1002_00271 0.15 +1.6
297,299 + MIT1002_00271 0.15 +0.6
297,307 - MIT1002_00271 0.15 +1.4
297,307 - MIT1002_00271 0.15 -0.2
297,317 - MIT1002_00271 0.16 -0.3
297,353 + MIT1002_00271 0.19 +0.8
297,447 + MIT1002_00271 0.27 +0.0
297,539 + MIT1002_00271 0.34 -0.1
297,539 + MIT1002_00271 0.34 -0.2
297,581 + MIT1002_00271 0.38 -0.0
297,589 - MIT1002_00271 0.38 +1.1
297,589 - MIT1002_00271 0.38 +0.7
297,607 + MIT1002_00271 0.40 +0.0
297,615 - MIT1002_00271 0.40 -0.1
297,622 - MIT1002_00271 0.41 -0.3
297,636 - MIT1002_00271 0.42 +0.0
297,694 + MIT1002_00271 0.47 +1.0
297,744 + MIT1002_00271 0.51 +0.3
297,752 - MIT1002_00271 0.52 +0.1
297,774 + MIT1002_00271 0.53 +0.0
297,789 - MIT1002_00271 0.55 -0.1
297,796 + MIT1002_00271 0.55 -0.1
297,803 + MIT1002_00271 0.56 -0.2
297,806 + MIT1002_00271 0.56 +0.4
297,817 + MIT1002_00271 0.57 +0.2
297,817 + MIT1002_00271 0.57 -0.3
297,817 + MIT1002_00271 0.57 +0.2
297,825 - MIT1002_00271 0.58 -1.2
297,825 - MIT1002_00271 0.58 -0.4
297,825 - MIT1002_00271 0.58 -0.7
297,882 - MIT1002_00271 0.62 +0.8
297,888 + MIT1002_00271 0.63 +0.5
297,888 + MIT1002_00271 0.63 -0.2
297,888 + MIT1002_00271 0.63 +0.0
297,896 - MIT1002_00271 0.63 -0.0
297,948 + MIT1002_00271 0.68 +0.2
297,955 + MIT1002_00271 0.68 +0.3
297,955 + MIT1002_00271 0.68 -0.2
298,034 - MIT1002_00271 0.75 -1.8
298,034 - MIT1002_00271 0.75 -4.0
298,126 + MIT1002_00271 0.82 +0.6
298,171 + MIT1002_00271 0.86 -0.0
298,224 + +0.3
298,248 - +0.2
298,248 - +0.9
298,248 - +0.6
298,332 + +0.5
298,347 + -0.7
298,445 - MIT1002_00272 0.16 -0.5
298,484 + MIT1002_00272 0.23 -0.3
298,492 - MIT1002_00272 0.24 -0.2
298,503 - MIT1002_00272 0.26 +0.8
298,528 + MIT1002_00272 0.31 -0.2
298,550 + MIT1002_00272 0.35 -0.1
298,569 - MIT1002_00272 0.38 +0.2
298,606 - MIT1002_00272 0.45 -0.1
298,676 + MIT1002_00272 0.57 -1.8
298,734 + MIT1002_00272 0.68 -0.1
298,818 - MIT1002_00272 0.83 -0.3
298,869 + +1.9
298,901 - -1.3
298,969 + MIT1002_00273 0.14 +0.2
298,998 - MIT1002_00273 0.20 +0.1
299,098 - MIT1002_00273 0.43 -2.0
299,100 + MIT1002_00273 0.44 -1.0
299,108 - MIT1002_00273 0.46 +1.3
299,108 - MIT1002_00273 0.46 +1.0
299,124 + MIT1002_00273 0.49 +0.8
299,126 + MIT1002_00273 0.50 +0.3
299,161 - MIT1002_00273 0.58 -1.6
299,225 - MIT1002_00273 0.73 -0.1
299,236 - MIT1002_00273 0.75 -0.9
299,262 - MIT1002_00273 0.81 -0.1
299,276 + MIT1002_00273 0.84 +0.9
299,282 - MIT1002_00273 0.86 -0.9
299,329 + +0.4
299,329 + -0.0

Or see this region's nucleotide sequence