Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00213

Experiment: monoculture; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00211 and MIT1002_00212 are separated by 27 nucleotidesMIT1002_00212 and MIT1002_00213 are separated by 44 nucleotidesMIT1002_00213 and MIT1002_00214 are separated by 22 nucleotidesMIT1002_00214 and MIT1002_00215 are separated by 1 nucleotidesMIT1002_00215 and MIT1002_00216 overlap by 11 nucleotides MIT1002_00211: MIT1002_00211 - General secretion pathway protein F, at 234,625 to 235,860 _00211 MIT1002_00212: MIT1002_00212 - hypothetical protein, at 235,888 to 236,382 _00212 MIT1002_00213: MIT1002_00213 - Pilin, at 236,427 to 237,014 _00213 MIT1002_00214: MIT1002_00214 - Serogroup C1, at 237,037 to 237,549 _00214 MIT1002_00215: MIT1002_00215 - Tfp pilus assembly protein PilE, at 237,551 to 238,012 _00215 MIT1002_00216: MIT1002_00216 - Tfp pilus assembly protein PilV, at 238,002 to 238,523 _00216 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 235.427 kb on + strand, within MIT1002_00211at 235.660 kb on + strand, within MIT1002_00211at 235.668 kb on - strand, within MIT1002_00211at 235.708 kb on - strand, within MIT1002_00211at 235.708 kb on - strand, within MIT1002_00211at 235.784 kb on + strandat 235.887 kb on - strandat 235.953 kb on - strand, within MIT1002_00212at 235.993 kb on + strand, within MIT1002_00212at 236.028 kb on + strand, within MIT1002_00212at 236.036 kb on - strand, within MIT1002_00212at 236.054 kb on + strand, within MIT1002_00212at 236.072 kb on - strand, within MIT1002_00212at 236.123 kb on + strand, within MIT1002_00212at 236.133 kb on + strand, within MIT1002_00212at 236.133 kb on + strand, within MIT1002_00212at 236.141 kb on - strand, within MIT1002_00212at 236.205 kb on - strand, within MIT1002_00212at 236.294 kb on + strand, within MIT1002_00212at 236.446 kb on + strandat 236.473 kb on - strandat 236.508 kb on + strand, within MIT1002_00213at 236.518 kb on + strand, within MIT1002_00213at 236.583 kb on + strand, within MIT1002_00213at 236.613 kb on + strand, within MIT1002_00213at 236.613 kb on + strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.629 kb on - strand, within MIT1002_00213at 236.685 kb on + strand, within MIT1002_00213at 236.702 kb on + strand, within MIT1002_00213at 236.706 kb on - strand, within MIT1002_00213at 236.719 kb on + strand, within MIT1002_00213at 236.727 kb on - strand, within MIT1002_00213at 236.869 kb on - strand, within MIT1002_00213at 236.934 kb on - strand, within MIT1002_00213at 236.999 kb on + strandat 237.062 kb on + strandat 237.070 kb on - strandat 237.070 kb on - strandat 237.070 kb on - strandat 237.107 kb on - strand, within MIT1002_00214at 237.119 kb on + strand, within MIT1002_00214at 237.174 kb on - strand, within MIT1002_00214at 237.193 kb on - strand, within MIT1002_00214at 237.231 kb on - strand, within MIT1002_00214at 237.231 kb on - strand, within MIT1002_00214at 237.265 kb on + strand, within MIT1002_00214at 237.275 kb on + strand, within MIT1002_00214at 237.283 kb on - strand, within MIT1002_00214at 237.292 kb on + strand, within MIT1002_00214at 237.292 kb on + strand, within MIT1002_00214at 237.292 kb on + strand, within MIT1002_00214at 237.292 kb on + strand, within MIT1002_00214at 237.300 kb on - strand, within MIT1002_00214at 237.300 kb on - strand, within MIT1002_00214at 237.300 kb on - strand, within MIT1002_00214at 237.359 kb on - strand, within MIT1002_00214at 237.426 kb on + strand, within MIT1002_00214at 237.427 kb on + strand, within MIT1002_00214at 237.431 kb on + strand, within MIT1002_00214at 237.435 kb on - strand, within MIT1002_00214at 237.439 kb on - strand, within MIT1002_00214at 237.448 kb on + strand, within MIT1002_00214at 237.497 kb on + strand, within MIT1002_00214at 237.497 kb on - strand, within MIT1002_00214at 237.515 kb on - strandat 237.516 kb on - strandat 237.581 kb on - strandat 237.613 kb on + strand, within MIT1002_00215at 237.621 kb on + strand, within MIT1002_00215at 237.659 kb on + strand, within MIT1002_00215at 237.668 kb on - strand, within MIT1002_00215at 237.683 kb on + strand, within MIT1002_00215at 237.691 kb on - strand, within MIT1002_00215at 237.691 kb on - strand, within MIT1002_00215at 237.706 kb on + strand, within MIT1002_00215at 237.725 kb on + strand, within MIT1002_00215at 237.779 kb on + strand, within MIT1002_00215at 237.779 kb on + strand, within MIT1002_00215at 237.779 kb on + strand, within MIT1002_00215at 237.787 kb on - strand, within MIT1002_00215at 237.820 kb on + strand, within MIT1002_00215at 237.827 kb on - strand, within MIT1002_00215at 237.934 kb on + strand, within MIT1002_00215at 237.936 kb on + strand, within MIT1002_00215at 237.944 kb on - strand, within MIT1002_00215at 238.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 2
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235,427 + MIT1002_00211 0.65 +0.3
235,660 + MIT1002_00211 0.84 +0.4
235,668 - MIT1002_00211 0.84 +1.7
235,708 - MIT1002_00211 0.88 -0.3
235,708 - MIT1002_00211 0.88 +0.7
235,784 + +0.6
235,887 - -1.4
235,953 - MIT1002_00212 0.13 +0.0
235,993 + MIT1002_00212 0.21 +0.9
236,028 + MIT1002_00212 0.28 -0.1
236,036 - MIT1002_00212 0.30 +0.1
236,054 + MIT1002_00212 0.34 -0.6
236,072 - MIT1002_00212 0.37 -0.1
236,123 + MIT1002_00212 0.47 -1.3
236,133 + MIT1002_00212 0.49 +0.3
236,133 + MIT1002_00212 0.49 -0.1
236,141 - MIT1002_00212 0.51 +0.5
236,205 - MIT1002_00212 0.64 +0.3
236,294 + MIT1002_00212 0.82 -1.3
236,446 + -0.4
236,473 - -1.1
236,508 + MIT1002_00213 0.14 -0.4
236,518 + MIT1002_00213 0.15 +1.4
236,583 + MIT1002_00213 0.27 -0.6
236,613 + MIT1002_00213 0.32 -1.8
236,613 + MIT1002_00213 0.32 -1.0
236,621 - MIT1002_00213 0.33 -0.7
236,621 - MIT1002_00213 0.33 -0.2
236,621 - MIT1002_00213 0.33 -1.7
236,621 - MIT1002_00213 0.33 -1.6
236,629 - MIT1002_00213 0.34 -0.8
236,685 + MIT1002_00213 0.44 -0.5
236,702 + MIT1002_00213 0.47 -0.6
236,706 - MIT1002_00213 0.47 +0.9
236,719 + MIT1002_00213 0.50 -0.7
236,727 - MIT1002_00213 0.51 -0.9
236,869 - MIT1002_00213 0.75 -0.3
236,934 - MIT1002_00213 0.86 +0.7
236,999 + -0.5
237,062 + +0.1
237,070 - -0.5
237,070 - -0.3
237,070 - +1.3
237,107 - MIT1002_00214 0.14 -0.0
237,119 + MIT1002_00214 0.16 +0.6
237,174 - MIT1002_00214 0.27 +0.5
237,193 - MIT1002_00214 0.30 -1.3
237,231 - MIT1002_00214 0.38 -0.8
237,231 - MIT1002_00214 0.38 +1.5
237,265 + MIT1002_00214 0.44 +0.3
237,275 + MIT1002_00214 0.46 +0.6
237,283 - MIT1002_00214 0.48 +0.9
237,292 + MIT1002_00214 0.50 -0.1
237,292 + MIT1002_00214 0.50 -0.1
237,292 + MIT1002_00214 0.50 +6.7
237,292 + MIT1002_00214 0.50 -1.1
237,300 - MIT1002_00214 0.51 -0.0
237,300 - MIT1002_00214 0.51 -0.2
237,300 - MIT1002_00214 0.51 -0.6
237,359 - MIT1002_00214 0.63 +2.3
237,426 + MIT1002_00214 0.76 -0.2
237,427 + MIT1002_00214 0.76 +0.3
237,431 + MIT1002_00214 0.77 -0.1
237,435 - MIT1002_00214 0.78 +0.0
237,439 - MIT1002_00214 0.78 +0.3
237,448 + MIT1002_00214 0.80 -0.7
237,497 + MIT1002_00214 0.90 +0.9
237,497 - MIT1002_00214 0.90 +1.3
237,515 - +0.2
237,516 - +0.7
237,581 - -0.2
237,613 + MIT1002_00215 0.13 +0.3
237,621 + MIT1002_00215 0.15 -0.7
237,659 + MIT1002_00215 0.23 -0.5
237,668 - MIT1002_00215 0.25 +0.2
237,683 + MIT1002_00215 0.29 +0.8
237,691 - MIT1002_00215 0.30 -0.0
237,691 - MIT1002_00215 0.30 -0.1
237,706 + MIT1002_00215 0.34 +0.3
237,725 + MIT1002_00215 0.38 -0.6
237,779 + MIT1002_00215 0.49 -1.1
237,779 + MIT1002_00215 0.49 +1.6
237,779 + MIT1002_00215 0.49 +1.0
237,787 - MIT1002_00215 0.51 -0.5
237,820 + MIT1002_00215 0.58 +0.2
237,827 - MIT1002_00215 0.60 +0.9
237,934 + MIT1002_00215 0.83 +0.7
237,936 + MIT1002_00215 0.83 +1.4
237,944 - MIT1002_00215 0.85 -0.7
238,010 - +0.3

Or see this region's nucleotide sequence