Experiment: Filtered_supernatant_MT80_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32965 and QEN71_RS32970 are separated by 27 nucleotides QEN71_RS32970 and QEN71_RS32975 overlap by 4 nucleotides
QEN71_RS32965: QEN71_RS32965 - AI-2E family transporter, at 723,400 to 724,503
_RS32965
QEN71_RS32970: QEN71_RS32970 - efflux transporter outer membrane subunit, at 724,531 to 726,072
_RS32970
QEN71_RS32975: QEN71_RS32975 - HlyD family secretion protein, at 726,069 to 727,223
_RS32975
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -1
0
1
2 at 723.661 kb on + strand, within QEN71_RS32965 at 723.661 kb on + strand, within QEN71_RS32965 at 723.662 kb on - strand, within QEN71_RS32965 at 725.074 kb on + strand, within QEN71_RS32970 at 725.074 kb on + strand, within QEN71_RS32970 at 725.074 kb on + strand, within QEN71_RS32970 at 725.075 kb on - strand, within QEN71_RS32970 at 725.075 kb on - strand, within QEN71_RS32970 at 725.219 kb on - strand, within QEN71_RS32970 at 725.219 kb on - strand, within QEN71_RS32970 at 725.621 kb on + strand, within QEN71_RS32970 at 725.621 kb on + strand, within QEN71_RS32970 at 725.622 kb on - strand, within QEN71_RS32970 at 725.812 kb on + strand, within QEN71_RS32970 at 725.813 kb on - strand, within QEN71_RS32970 at 725.872 kb on + strand, within QEN71_RS32970 at 725.873 kb on - strand, within QEN71_RS32970 at 725.873 kb on - strand, within QEN71_RS32970 at 725.873 kb on - strand, within QEN71_RS32970 at 725.918 kb on - strand at 726.236 kb on + strand, within QEN71_RS32975 at 726.237 kb on - strand, within QEN71_RS32975 at 726.243 kb on + strand, within QEN71_RS32975 at 726.244 kb on - strand, within QEN71_RS32975 at 726.246 kb on - strand, within QEN71_RS32975 at 726.271 kb on - strand, within QEN71_RS32975 at 726.446 kb on + strand, within QEN71_RS32975 at 726.447 kb on - strand, within QEN71_RS32975 at 726.562 kb on + strand, within QEN71_RS32975 at 726.562 kb on + strand, within QEN71_RS32975 at 726.850 kb on + strand, within QEN71_RS32975 at 726.850 kb on + strand, within QEN71_RS32975 at 726.851 kb on - strand, within QEN71_RS32975
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB remove 723,661 + QEN71_RS32965 0.24 -0.9 723,661 + QEN71_RS32965 0.24 +0.5 723,662 - QEN71_RS32965 0.24 -0.4 725,074 + QEN71_RS32970 0.35 -1.1 725,074 + QEN71_RS32970 0.35 -1.0 725,074 + QEN71_RS32970 0.35 -0.0 725,075 - QEN71_RS32970 0.35 +0.0 725,075 - QEN71_RS32970 0.35 +0.9 725,219 - QEN71_RS32970 0.45 -1.2 725,219 - QEN71_RS32970 0.45 -1.1 725,621 + QEN71_RS32970 0.71 -1.4 725,621 + QEN71_RS32970 0.71 +1.1 725,622 - QEN71_RS32970 0.71 -0.3 725,812 + QEN71_RS32970 0.83 -1.0 725,813 - QEN71_RS32970 0.83 -0.4 725,872 + QEN71_RS32970 0.87 -1.1 725,873 - QEN71_RS32970 0.87 -1.0 725,873 - QEN71_RS32970 0.87 -0.6 725,873 - QEN71_RS32970 0.87 -0.3 725,918 - +0.1 726,236 + QEN71_RS32975 0.14 -0.8 726,237 - QEN71_RS32975 0.15 +0.6 726,243 + QEN71_RS32975 0.15 +2.2 726,244 - QEN71_RS32975 0.15 +0.6 726,246 - QEN71_RS32975 0.15 +2.0 726,271 - QEN71_RS32975 0.17 +0.7 726,446 + QEN71_RS32975 0.33 +0.2 726,447 - QEN71_RS32975 0.33 -0.6 726,562 + QEN71_RS32975 0.43 +0.1 726,562 + QEN71_RS32975 0.43 -0.5 726,850 + QEN71_RS32975 0.68 +0.1 726,850 + QEN71_RS32975 0.68 -0.8 726,851 - QEN71_RS32975 0.68 -0.1
Or see this region's nucleotide sequence