Experiment: Filtered_supernatant_MT80_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32580 and QEN71_RS32585 are separated by 1 nucleotides QEN71_RS32585 and QEN71_RS32590 are separated by 26 nucleotides QEN71_RS32590 and QEN71_RS32595 are separated by 8 nucleotides QEN71_RS32595 and QEN71_RS32600 are separated by 125 nucleotides
QEN71_RS32580: QEN71_RS32580 - ABC transporter permease, at 646,330 to 647,214
_RS32580
QEN71_RS32585: QEN71_RS32585 - ABC transporter permease, at 647,216 to 648,010
_RS32585
QEN71_RS32590: QEN71_RS32590 - ABC transporter ATP-binding protein, at 648,037 to 649,134
_RS32590
QEN71_RS32595: QEN71_RS32595 - GntR family transcriptional regulator, at 649,143 to 649,838
_RS32595
QEN71_RS32600: QEN71_RS32600 - nuclear transport factor 2 family protein, at 649,964 to 650,443
_RS32600
Position (kb) 648
649
650 Strain fitness (log2 ratio) -2
-1
0
1
2 at 647.158 kb on + strand at 647.158 kb on + strand at 647.158 kb on + strand at 647.588 kb on + strand, within QEN71_RS32585 at 647.809 kb on + strand, within QEN71_RS32585 at 647.971 kb on - strand at 648.178 kb on + strand, within QEN71_RS32590 at 648.574 kb on - strand, within QEN71_RS32590 at 648.780 kb on + strand, within QEN71_RS32590 at 648.792 kb on + strand, within QEN71_RS32590 at 648.919 kb on - strand, within QEN71_RS32590 at 648.973 kb on + strand, within QEN71_RS32590 at 648.974 kb on - strand, within QEN71_RS32590 at 648.974 kb on - strand, within QEN71_RS32590 at 649.142 kb on + strand at 649.229 kb on - strand, within QEN71_RS32595 at 649.295 kb on - strand, within QEN71_RS32595 at 649.413 kb on + strand, within QEN71_RS32595 at 649.850 kb on - strand at 649.850 kb on - strand at 649.861 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB remove 647,158 + +0.4 647,158 + +1.6 647,158 + +2.3 647,588 + QEN71_RS32585 0.47 +0.8 647,809 + QEN71_RS32585 0.75 +0.3 647,971 - +0.4 648,178 + QEN71_RS32590 0.13 +0.4 648,574 - QEN71_RS32590 0.49 +0.3 648,780 + QEN71_RS32590 0.68 +0.3 648,792 + QEN71_RS32590 0.69 +0.3 648,919 - QEN71_RS32590 0.80 +0.5 648,973 + QEN71_RS32590 0.85 -0.8 648,974 - QEN71_RS32590 0.85 -1.0 648,974 - QEN71_RS32590 0.85 -0.8 649,142 + +0.1 649,229 - QEN71_RS32595 0.12 -2.4 649,295 - QEN71_RS32595 0.22 -1.4 649,413 + QEN71_RS32595 0.39 -1.2 649,850 - +1.9 649,850 - +0.4 649,861 + +0.5
Or see this region's nucleotide sequence