Experiment: Filtered_supernatant_MT80_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30710 and QEN71_RS30715 overlap by 1 nucleotides QEN71_RS30715 and QEN71_RS30720 are separated by 15 nucleotides QEN71_RS30720 and QEN71_RS30725 are separated by 222 nucleotides
QEN71_RS30710: QEN71_RS30710 - AraC family transcriptional regulator, at 231,471 to 232,007
_RS30710
QEN71_RS30715: QEN71_RS30715 - VOC family protein, at 232,007 to 232,414
_RS30715
QEN71_RS30720: QEN71_RS30720 - hybrid sensor histidine kinase/response regulator, at 232,430 to 234,604
_RS30720
QEN71_RS30725: QEN71_RS30725 - MFS transporter, at 234,827 to 236,083
_RS30725
Position (kb) 232
233
234
235 Strain fitness (log2 ratio) -2
-1
0
1 at 231.436 kb on - strand at 231.436 kb on - strand at 231.440 kb on + strand at 231.440 kb on + strand at 231.440 kb on + strand at 231.441 kb on - strand at 231.696 kb on + strand, within QEN71_RS30710 at 231.696 kb on + strand, within QEN71_RS30710 at 231.697 kb on - strand, within QEN71_RS30710 at 231.697 kb on - strand, within QEN71_RS30710 at 231.697 kb on - strand, within QEN71_RS30710 at 231.971 kb on + strand at 231.971 kb on + strand at 231.972 kb on - strand at 231.972 kb on - strand at 232.001 kb on - strand at 232.019 kb on - strand at 232.019 kb on - strand at 232.037 kb on + strand at 232.038 kb on - strand at 232.070 kb on + strand, within QEN71_RS30715 at 232.071 kb on - strand, within QEN71_RS30715 at 232.071 kb on - strand, within QEN71_RS30715 at 232.071 kb on - strand, within QEN71_RS30715 at 232.071 kb on - strand, within QEN71_RS30715 at 232.099 kb on + strand, within QEN71_RS30715 at 232.099 kb on + strand, within QEN71_RS30715 at 232.100 kb on - strand, within QEN71_RS30715 at 232.289 kb on + strand, within QEN71_RS30715 at 232.289 kb on + strand, within QEN71_RS30715 at 232.289 kb on + strand, within QEN71_RS30715 at 232.290 kb on - strand, within QEN71_RS30715 at 232.290 kb on - strand, within QEN71_RS30715 at 232.290 kb on - strand, within QEN71_RS30715 at 232.290 kb on - strand, within QEN71_RS30715 at 232.412 kb on + strand at 232.413 kb on - strand at 232.803 kb on + strand, within QEN71_RS30720 at 232.803 kb on + strand, within QEN71_RS30720 at 232.803 kb on + strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.804 kb on - strand, within QEN71_RS30720 at 232.854 kb on + strand, within QEN71_RS30720 at 232.855 kb on - strand, within QEN71_RS30720 at 233.055 kb on + strand, within QEN71_RS30720 at 233.055 kb on + strand, within QEN71_RS30720 at 233.056 kb on - strand, within QEN71_RS30720 at 233.056 kb on - strand, within QEN71_RS30720 at 233.056 kb on - strand, within QEN71_RS30720 at 233.056 kb on - strand, within QEN71_RS30720 at 233.056 kb on - strand, within QEN71_RS30720 at 233.436 kb on - strand, within QEN71_RS30720 at 233.466 kb on + strand, within QEN71_RS30720 at 233.466 kb on + strand, within QEN71_RS30720 at 233.466 kb on + strand, within QEN71_RS30720 at 233.466 kb on + strand, within QEN71_RS30720 at 233.467 kb on - strand, within QEN71_RS30720 at 233.467 kb on - strand, within QEN71_RS30720 at 233.467 kb on - strand, within QEN71_RS30720 at 233.703 kb on + strand, within QEN71_RS30720 at 233.703 kb on + strand, within QEN71_RS30720 at 233.704 kb on - strand, within QEN71_RS30720 at 233.745 kb on + strand, within QEN71_RS30720 at 233.745 kb on + strand, within QEN71_RS30720 at 233.746 kb on - strand, within QEN71_RS30720 at 233.764 kb on - strand, within QEN71_RS30720 at 233.922 kb on + strand, within QEN71_RS30720 at 233.922 kb on + strand, within QEN71_RS30720 at 233.923 kb on - strand, within QEN71_RS30720 at 233.968 kb on - strand, within QEN71_RS30720 at 233.968 kb on - strand, within QEN71_RS30720 at 233.982 kb on + strand, within QEN71_RS30720 at 234.099 kb on + strand, within QEN71_RS30720 at 234.099 kb on + strand, within QEN71_RS30720 at 234.100 kb on - strand, within QEN71_RS30720 at 234.100 kb on - strand, within QEN71_RS30720 at 234.100 kb on - strand, within QEN71_RS30720 at 234.423 kb on + strand at 234.423 kb on + strand at 234.424 kb on - strand at 234.435 kb on + strand at 234.435 kb on + strand at 234.435 kb on + strand at 234.435 kb on + strand at 234.435 kb on + strand at 234.435 kb on + strand at 234.435 kb on + strand at 234.435 kb on + strand at 234.441 kb on + strand at 234.441 kb on + strand at 234.441 kb on + strand at 234.442 kb on - strand at 234.442 kb on - strand at 234.444 kb on + strand at 234.444 kb on + strand at 234.445 kb on - strand at 234.575 kb on + strand at 234.575 kb on + strand at 234.575 kb on + strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.576 kb on - strand at 234.592 kb on + strand at 234.621 kb on + strand at 234.622 kb on - strand at 234.634 kb on - strand at 234.728 kb on + strand at 234.728 kb on + strand at 234.728 kb on + strand at 234.728 kb on + strand at 234.728 kb on + strand at 234.728 kb on + strand at 234.728 kb on + strand at 234.729 kb on - strand at 234.729 kb on - strand at 234.729 kb on - strand at 234.729 kb on - strand at 234.729 kb on - strand at 234.729 kb on - strand at 234.729 kb on - strand at 234.805 kb on + strand at 234.805 kb on + strand at 234.805 kb on + strand at 234.805 kb on + strand at 234.805 kb on + strand at 234.805 kb on + strand at 234.805 kb on + strand at 234.806 kb on - strand at 234.806 kb on - strand at 234.806 kb on - strand at 234.806 kb on - strand at 234.806 kb on - strand at 234.940 kb on - strand at 235.331 kb on + strand, within QEN71_RS30725 at 235.331 kb on + strand, within QEN71_RS30725 at 235.331 kb on + strand, within QEN71_RS30725 at 235.331 kb on + strand, within QEN71_RS30725 at 235.343 kb on + strand, within QEN71_RS30725 at 235.343 kb on + strand, within QEN71_RS30725 at 235.343 kb on + strand, within QEN71_RS30725 at 235.343 kb on + strand, within QEN71_RS30725 at 235.343 kb on + strand, within QEN71_RS30725 at 235.343 kb on + strand, within QEN71_RS30725 at 235.343 kb on + strand, within QEN71_RS30725 at 235.344 kb on - strand, within QEN71_RS30725 at 235.344 kb on - strand, within QEN71_RS30725
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB remove 231,436 - -0.8 231,436 - +0.5 231,440 + -0.4 231,440 + -1.3 231,440 + +0.2 231,441 - -0.0 231,696 + QEN71_RS30710 0.42 -0.1 231,696 + QEN71_RS30710 0.42 -0.7 231,697 - QEN71_RS30710 0.42 -1.2 231,697 - QEN71_RS30710 0.42 -0.8 231,697 - QEN71_RS30710 0.42 -0.0 231,971 + -0.4 231,971 + -1.7 231,972 - -0.8 231,972 - -0.1 232,001 - -0.2 232,019 - +0.2 232,019 - -0.6 232,037 + -0.9 232,038 - +1.2 232,070 + QEN71_RS30715 0.15 -0.4 232,071 - QEN71_RS30715 0.16 +0.0 232,071 - QEN71_RS30715 0.16 -0.3 232,071 - QEN71_RS30715 0.16 +1.2 232,071 - QEN71_RS30715 0.16 +0.9 232,099 + QEN71_RS30715 0.23 -0.3 232,099 + QEN71_RS30715 0.23 -0.2 232,100 - QEN71_RS30715 0.23 -0.0 232,289 + QEN71_RS30715 0.69 +0.2 232,289 + QEN71_RS30715 0.69 -0.3 232,289 + QEN71_RS30715 0.69 -0.4 232,290 - QEN71_RS30715 0.69 +0.5 232,290 - QEN71_RS30715 0.69 -0.3 232,290 - QEN71_RS30715 0.69 +0.5 232,290 - QEN71_RS30715 0.69 -0.8 232,412 + +0.0 232,413 - +0.2 232,803 + QEN71_RS30720 0.17 -0.1 232,803 + QEN71_RS30720 0.17 +0.0 232,803 + QEN71_RS30720 0.17 -0.6 232,804 - QEN71_RS30720 0.17 -2.0 232,804 - QEN71_RS30720 0.17 +0.3 232,804 - QEN71_RS30720 0.17 -1.1 232,804 - QEN71_RS30720 0.17 +1.0 232,804 - QEN71_RS30720 0.17 -1.9 232,804 - QEN71_RS30720 0.17 +0.8 232,804 - QEN71_RS30720 0.17 -0.4 232,804 - QEN71_RS30720 0.17 +0.2 232,804 - QEN71_RS30720 0.17 -0.6 232,854 + QEN71_RS30720 0.19 -0.3 232,855 - QEN71_RS30720 0.20 +1.5 233,055 + QEN71_RS30720 0.29 -1.0 233,055 + QEN71_RS30720 0.29 +0.1 233,056 - QEN71_RS30720 0.29 +1.2 233,056 - QEN71_RS30720 0.29 -0.5 233,056 - QEN71_RS30720 0.29 +0.4 233,056 - QEN71_RS30720 0.29 +1.3 233,056 - QEN71_RS30720 0.29 -0.2 233,436 - QEN71_RS30720 0.46 -0.5 233,466 + QEN71_RS30720 0.48 -1.8 233,466 + QEN71_RS30720 0.48 +0.9 233,466 + QEN71_RS30720 0.48 +1.2 233,466 + QEN71_RS30720 0.48 +1.2 233,467 - QEN71_RS30720 0.48 -0.6 233,467 - QEN71_RS30720 0.48 -0.0 233,467 - QEN71_RS30720 0.48 -0.3 233,703 + QEN71_RS30720 0.59 -0.5 233,703 + QEN71_RS30720 0.59 -0.6 233,704 - QEN71_RS30720 0.59 -0.7 233,745 + QEN71_RS30720 0.60 +0.2 233,745 + QEN71_RS30720 0.60 -0.8 233,746 - QEN71_RS30720 0.61 +0.4 233,764 - QEN71_RS30720 0.61 -0.3 233,922 + QEN71_RS30720 0.69 -0.2 233,922 + QEN71_RS30720 0.69 +0.2 233,923 - QEN71_RS30720 0.69 -1.0 233,968 - QEN71_RS30720 0.71 -0.8 233,968 - QEN71_RS30720 0.71 -0.1 233,982 + QEN71_RS30720 0.71 -0.5 234,099 + QEN71_RS30720 0.77 +0.2 234,099 + QEN71_RS30720 0.77 +0.4 234,100 - QEN71_RS30720 0.77 -0.5 234,100 - QEN71_RS30720 0.77 +0.3 234,100 - QEN71_RS30720 0.77 -1.8 234,423 + +0.3 234,423 + -0.0 234,424 - +1.0 234,435 + -0.1 234,435 + +0.4 234,435 + -1.5 234,435 + +0.4 234,435 + -0.6 234,435 + -0.5 234,435 + -0.4 234,435 + -0.7 234,441 + +0.3 234,441 + -0.6 234,441 + +1.5 234,442 - +1.0 234,442 - -0.5 234,444 + -0.4 234,444 + +0.6 234,445 - -0.6 234,575 + -1.4 234,575 + +0.4 234,575 + +0.1 234,576 - -0.2 234,576 - -0.0 234,576 - +0.3 234,576 - -0.3 234,576 - -0.2 234,576 - -0.8 234,576 - -0.9 234,576 - -0.4 234,576 - -1.8 234,576 - -0.4 234,576 - -0.1 234,576 - +0.1 234,576 - +0.7 234,576 - +0.5 234,592 + -1.4 234,621 + -1.2 234,622 - +1.2 234,634 - -0.7 234,728 + -1.2 234,728 + -0.8 234,728 + +0.2 234,728 + -1.1 234,728 + -1.5 234,728 + -0.4 234,728 + +1.0 234,729 - +0.5 234,729 - -0.2 234,729 - -0.5 234,729 - +1.0 234,729 - -0.8 234,729 - -0.7 234,729 - +0.3 234,805 + -1.7 234,805 + -2.3 234,805 + -0.3 234,805 + -0.3 234,805 + +0.5 234,805 + -1.5 234,805 + -0.2 234,806 - -0.0 234,806 - +0.1 234,806 - -0.1 234,806 - -0.6 234,806 - +1.0 234,940 - -0.7 235,331 + QEN71_RS30725 0.40 -0.9 235,331 + QEN71_RS30725 0.40 -0.4 235,331 + QEN71_RS30725 0.40 -0.6 235,331 + QEN71_RS30725 0.40 +0.1 235,343 + QEN71_RS30725 0.41 -0.7 235,343 + QEN71_RS30725 0.41 -0.9 235,343 + QEN71_RS30725 0.41 +1.1 235,343 + QEN71_RS30725 0.41 -0.0 235,343 + QEN71_RS30725 0.41 +0.3 235,343 + QEN71_RS30725 0.41 +0.8 235,343 + QEN71_RS30725 0.41 -0.7 235,344 - QEN71_RS30725 0.41 +0.6 235,344 - QEN71_RS30725 0.41 -0.2
Or see this region's nucleotide sequence