Experiment: Filtered_supernatant_MT80_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS26585 and QEN71_RS26590 are separated by 9 nucleotides QEN71_RS26590 and QEN71_RS26595 are separated by 117 nucleotides QEN71_RS26595 and QEN71_RS26600 are separated by 14 nucleotides
QEN71_RS26585: QEN71_RS26585 - glycolate oxidase subunit GlcE, at 5,935,134 to 5,936,222
_RS26585
QEN71_RS26590: QEN71_RS26590 - glycolate oxidase subunit GlcF, at 5,936,232 to 5,937,458
_RS26590
QEN71_RS26595: QEN71_RS26595 - YggS family pyridoxal phosphate-dependent enzyme, at 5,937,576 to 5,938,274
_RS26595
QEN71_RS26600: QEN71_RS26600 - pyrroline-5-carboxylate reductase, at 5,938,289 to 5,939,104
_RS26600
Position (kb) 5936
5937
5938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5935.237 kb on - strand at 5935.237 kb on - strand at 5935.237 kb on - strand at 5935.237 kb on - strand at 5935.296 kb on + strand, within QEN71_RS26585 at 5935.296 kb on + strand, within QEN71_RS26585 at 5935.296 kb on + strand, within QEN71_RS26585 at 5935.296 kb on + strand, within QEN71_RS26585 at 5935.297 kb on - strand, within QEN71_RS26585 at 5935.627 kb on + strand, within QEN71_RS26585 at 5935.628 kb on - strand, within QEN71_RS26585 at 5936.038 kb on + strand, within QEN71_RS26585 at 5936.038 kb on + strand, within QEN71_RS26585 at 5936.038 kb on + strand, within QEN71_RS26585 at 5936.038 kb on + strand, within QEN71_RS26585 at 5936.039 kb on - strand, within QEN71_RS26585 at 5936.097 kb on + strand, within QEN71_RS26585 at 5936.098 kb on - strand, within QEN71_RS26585 at 5936.098 kb on - strand, within QEN71_RS26585 at 5936.098 kb on - strand, within QEN71_RS26585 at 5936.098 kb on - strand, within QEN71_RS26585 at 5936.098 kb on - strand, within QEN71_RS26585 at 5936.116 kb on + strand at 5936.116 kb on + strand at 5936.116 kb on + strand at 5936.116 kb on + strand at 5936.116 kb on + strand at 5936.117 kb on - strand at 5936.117 kb on - strand at 5936.117 kb on - strand at 5936.117 kb on - strand at 5936.117 kb on - strand at 5936.208 kb on + strand at 5936.209 kb on - strand at 5936.343 kb on + strand at 5936.343 kb on + strand at 5936.343 kb on + strand at 5936.343 kb on + strand at 5936.343 kb on + strand at 5936.343 kb on + strand at 5936.344 kb on - strand at 5936.344 kb on - strand at 5936.344 kb on - strand at 5936.344 kb on - strand at 5936.344 kb on - strand at 5936.344 kb on - strand at 5936.344 kb on - strand at 5936.344 kb on - strand at 5936.344 kb on - strand at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.388 kb on + strand, within QEN71_RS26590 at 5936.389 kb on - strand, within QEN71_RS26590 at 5936.389 kb on - strand, within QEN71_RS26590 at 5936.389 kb on - strand, within QEN71_RS26590 at 5936.389 kb on - strand, within QEN71_RS26590 at 5936.389 kb on - strand, within QEN71_RS26590 at 5936.389 kb on - strand, within QEN71_RS26590 at 5936.389 kb on - strand, within QEN71_RS26590 at 5936.502 kb on + strand, within QEN71_RS26590 at 5936.503 kb on - strand, within QEN71_RS26590 at 5936.600 kb on - strand, within QEN71_RS26590 at 5936.880 kb on + strand, within QEN71_RS26590 at 5936.880 kb on + strand, within QEN71_RS26590 at 5936.880 kb on + strand, within QEN71_RS26590 at 5936.881 kb on - strand, within QEN71_RS26590 at 5936.881 kb on - strand, within QEN71_RS26590 at 5937.000 kb on + strand, within QEN71_RS26590 at 5937.000 kb on + strand, within QEN71_RS26590 at 5937.000 kb on + strand, within QEN71_RS26590 at 5937.000 kb on + strand, within QEN71_RS26590 at 5937.000 kb on + strand, within QEN71_RS26590 at 5937.001 kb on - strand, within QEN71_RS26590 at 5937.030 kb on + strand, within QEN71_RS26590 at 5937.137 kb on + strand, within QEN71_RS26590 at 5937.137 kb on + strand, within QEN71_RS26590 at 5937.137 kb on + strand, within QEN71_RS26590 at 5937.137 kb on + strand, within QEN71_RS26590 at 5937.138 kb on - strand, within QEN71_RS26590 at 5937.138 kb on - strand, within QEN71_RS26590 at 5937.138 kb on - strand, within QEN71_RS26590 at 5937.138 kb on - strand, within QEN71_RS26590 at 5937.138 kb on - strand, within QEN71_RS26590 at 5937.138 kb on - strand, within QEN71_RS26590 at 5937.138 kb on - strand, within QEN71_RS26590 at 5937.138 kb on - strand, within QEN71_RS26590 at 5937.147 kb on + strand, within QEN71_RS26590 at 5937.147 kb on + strand, within QEN71_RS26590 at 5937.147 kb on + strand, within QEN71_RS26590 at 5937.148 kb on - strand, within QEN71_RS26590 at 5937.148 kb on - strand, within QEN71_RS26590 at 5937.276 kb on + strand, within QEN71_RS26590 at 5937.276 kb on + strand, within QEN71_RS26590 at 5937.276 kb on + strand, within QEN71_RS26590 at 5937.277 kb on - strand, within QEN71_RS26590 at 5937.277 kb on - strand, within QEN71_RS26590 at 5937.277 kb on - strand, within QEN71_RS26590 at 5937.277 kb on - strand, within QEN71_RS26590 at 5937.277 kb on - strand, within QEN71_RS26590 at 5937.277 kb on - strand, within QEN71_RS26590 at 5937.303 kb on + strand, within QEN71_RS26590 at 5937.304 kb on - strand, within QEN71_RS26590 at 5937.304 kb on - strand, within QEN71_RS26590 at 5937.380 kb on + strand at 5937.380 kb on + strand at 5937.380 kb on + strand at 5937.380 kb on + strand at 5937.381 kb on - strand at 5937.381 kb on - strand at 5937.480 kb on + strand at 5937.481 kb on - strand at 5937.481 kb on - strand at 5937.481 kb on - strand at 5937.535 kb on + strand at 5937.535 kb on + strand at 5937.536 kb on - strand at 5937.536 kb on - strand at 5937.536 kb on - strand at 5937.536 kb on - strand at 5937.536 kb on - strand at 5937.536 kb on - strand at 5937.536 kb on - strand at 5937.537 kb on + strand at 5937.537 kb on + strand at 5937.537 kb on + strand at 5937.537 kb on + strand at 5937.538 kb on - strand at 5937.538 kb on - strand at 5937.538 kb on - strand at 5937.747 kb on + strand, within QEN71_RS26595 at 5937.747 kb on + strand, within QEN71_RS26595 at 5937.747 kb on + strand, within QEN71_RS26595 at 5937.747 kb on + strand, within QEN71_RS26595 at 5937.748 kb on - strand, within QEN71_RS26595 at 5937.748 kb on - strand, within QEN71_RS26595 at 5937.926 kb on + strand, within QEN71_RS26595 at 5937.927 kb on - strand, within QEN71_RS26595 at 5938.263 kb on + strand at 5938.264 kb on - strand at 5938.264 kb on - strand at 5938.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB remove 5,935,237 - +0.4 5,935,237 - -0.6 5,935,237 - -0.4 5,935,237 - +0.8 5,935,296 + QEN71_RS26585 0.15 -1.6 5,935,296 + QEN71_RS26585 0.15 +0.0 5,935,296 + QEN71_RS26585 0.15 -0.6 5,935,296 + QEN71_RS26585 0.15 +0.8 5,935,297 - QEN71_RS26585 0.15 -0.4 5,935,627 + QEN71_RS26585 0.45 +0.0 5,935,628 - QEN71_RS26585 0.45 -0.6 5,936,038 + QEN71_RS26585 0.83 -1.4 5,936,038 + QEN71_RS26585 0.83 +1.1 5,936,038 + QEN71_RS26585 0.83 +0.0 5,936,038 + QEN71_RS26585 0.83 +0.3 5,936,039 - QEN71_RS26585 0.83 +0.1 5,936,097 + QEN71_RS26585 0.88 -0.3 5,936,098 - QEN71_RS26585 0.89 +0.4 5,936,098 - QEN71_RS26585 0.89 -0.2 5,936,098 - QEN71_RS26585 0.89 -0.1 5,936,098 - QEN71_RS26585 0.89 -1.3 5,936,098 - QEN71_RS26585 0.89 -0.5 5,936,116 + +0.9 5,936,116 + -0.6 5,936,116 + -0.3 5,936,116 + +0.8 5,936,116 + -0.2 5,936,117 - -1.2 5,936,117 - -0.3 5,936,117 - -0.6 5,936,117 - -0.9 5,936,117 - +0.3 5,936,208 + +0.2 5,936,209 - +0.5 5,936,343 + +0.1 5,936,343 + -0.0 5,936,343 + +0.0 5,936,343 + +0.2 5,936,343 + -1.2 5,936,343 + -0.2 5,936,344 - -0.9 5,936,344 - +1.1 5,936,344 - -0.5 5,936,344 - -0.6 5,936,344 - +0.2 5,936,344 - -0.2 5,936,344 - -0.1 5,936,344 - -0.0 5,936,344 - -3.1 5,936,388 + QEN71_RS26590 0.13 -1.7 5,936,388 + QEN71_RS26590 0.13 -3.2 5,936,388 + QEN71_RS26590 0.13 +0.8 5,936,388 + QEN71_RS26590 0.13 -0.4 5,936,388 + QEN71_RS26590 0.13 +0.6 5,936,388 + QEN71_RS26590 0.13 +0.1 5,936,388 + QEN71_RS26590 0.13 -0.8 5,936,388 + QEN71_RS26590 0.13 -1.1 5,936,388 + QEN71_RS26590 0.13 -0.6 5,936,389 - QEN71_RS26590 0.13 -0.8 5,936,389 - QEN71_RS26590 0.13 -0.2 5,936,389 - QEN71_RS26590 0.13 -1.2 5,936,389 - QEN71_RS26590 0.13 -1.2 5,936,389 - QEN71_RS26590 0.13 -0.0 5,936,389 - QEN71_RS26590 0.13 -0.3 5,936,389 - QEN71_RS26590 0.13 +0.1 5,936,502 + QEN71_RS26590 0.22 -0.5 5,936,503 - QEN71_RS26590 0.22 +0.2 5,936,600 - QEN71_RS26590 0.30 -1.4 5,936,880 + QEN71_RS26590 0.53 -0.6 5,936,880 + QEN71_RS26590 0.53 -0.2 5,936,880 + QEN71_RS26590 0.53 +0.1 5,936,881 - QEN71_RS26590 0.53 -0.8 5,936,881 - QEN71_RS26590 0.53 -0.2 5,937,000 + QEN71_RS26590 0.63 +0.1 5,937,000 + QEN71_RS26590 0.63 +0.0 5,937,000 + QEN71_RS26590 0.63 -1.2 5,937,000 + QEN71_RS26590 0.63 +0.1 5,937,000 + QEN71_RS26590 0.63 +0.2 5,937,001 - QEN71_RS26590 0.63 +0.4 5,937,030 + QEN71_RS26590 0.65 -1.0 5,937,137 + QEN71_RS26590 0.74 +0.8 5,937,137 + QEN71_RS26590 0.74 -0.2 5,937,137 + QEN71_RS26590 0.74 -0.2 5,937,137 + QEN71_RS26590 0.74 -0.2 5,937,138 - QEN71_RS26590 0.74 -0.7 5,937,138 - QEN71_RS26590 0.74 +1.8 5,937,138 - QEN71_RS26590 0.74 -0.1 5,937,138 - QEN71_RS26590 0.74 -0.0 5,937,138 - QEN71_RS26590 0.74 -0.2 5,937,138 - QEN71_RS26590 0.74 -1.1 5,937,138 - QEN71_RS26590 0.74 +0.1 5,937,138 - QEN71_RS26590 0.74 -2.1 5,937,147 + QEN71_RS26590 0.75 +1.4 5,937,147 + QEN71_RS26590 0.75 -1.1 5,937,147 + QEN71_RS26590 0.75 -0.4 5,937,148 - QEN71_RS26590 0.75 +0.5 5,937,148 - QEN71_RS26590 0.75 -0.5 5,937,276 + QEN71_RS26590 0.85 +0.7 5,937,276 + QEN71_RS26590 0.85 +0.5 5,937,276 + QEN71_RS26590 0.85 -1.0 5,937,277 - QEN71_RS26590 0.85 +0.2 5,937,277 - QEN71_RS26590 0.85 +0.8 5,937,277 - QEN71_RS26590 0.85 -0.4 5,937,277 - QEN71_RS26590 0.85 +0.3 5,937,277 - QEN71_RS26590 0.85 +0.8 5,937,277 - QEN71_RS26590 0.85 -0.5 5,937,303 + QEN71_RS26590 0.87 -0.8 5,937,304 - QEN71_RS26590 0.87 -0.6 5,937,304 - QEN71_RS26590 0.87 +0.3 5,937,380 + -0.1 5,937,380 + -0.4 5,937,380 + -1.6 5,937,380 + +0.4 5,937,381 - -0.9 5,937,381 - +0.3 5,937,480 + -1.6 5,937,481 - -1.5 5,937,481 - -1.0 5,937,481 - +1.8 5,937,535 + -0.7 5,937,535 + -0.2 5,937,536 - +1.0 5,937,536 - +0.1 5,937,536 - -0.7 5,937,536 - -1.3 5,937,536 - +0.4 5,937,536 - +1.0 5,937,536 - -1.0 5,937,537 + -0.0 5,937,537 + -1.2 5,937,537 + +0.4 5,937,537 + -0.8 5,937,538 - -1.7 5,937,538 - -0.1 5,937,538 - -0.1 5,937,747 + QEN71_RS26595 0.24 -0.2 5,937,747 + QEN71_RS26595 0.24 -0.4 5,937,747 + QEN71_RS26595 0.24 +0.3 5,937,747 + QEN71_RS26595 0.24 -2.1 5,937,748 - QEN71_RS26595 0.25 +0.0 5,937,748 - QEN71_RS26595 0.25 +1.0 5,937,926 + QEN71_RS26595 0.50 +0.5 5,937,927 - QEN71_RS26595 0.50 -0.2 5,938,263 + +0.5 5,938,264 - -0.6 5,938,264 - -0.2 5,938,264 - +1.0
Or see this region's nucleotide sequence