Experiment: Filtered_supernatant_MT80_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25405 and QEN71_RS25410 are separated by 30 nucleotides QEN71_RS25410 and QEN71_RS25415 are separated by 802 nucleotides
QEN71_RS25405: QEN71_RS25405 - Kdo hydroxylase family protein, at 5,650,178 to 5,651,062
_RS25405
QEN71_RS25410: QEN71_RS25410 - lipopolysaccharide heptosyltransferase I, at 5,651,093 to 5,652,034
_RS25410
QEN71_RS25415: QEN71_RS25415 - phosphomannomutase/phosphoglucomutase, at 5,652,837 to 5,654,231
_RS25415
Position (kb)
5651
5652
5653 Strain fitness (log2 ratio)
-2
-1
0
1 at 5650.127 kb on - strand at 5650.127 kb on - strand at 5650.381 kb on - strand, within QEN71_RS25405 at 5650.738 kb on - strand, within QEN71_RS25405 at 5650.738 kb on - strand, within QEN71_RS25405 at 5650.738 kb on - strand, within QEN71_RS25405 at 5650.954 kb on - strand, within QEN71_RS25405 at 5651.037 kb on - strand at 5651.084 kb on - strand at 5652.250 kb on + strand at 5652.251 kb on - strand at 5652.251 kb on - strand at 5652.251 kb on - strand at 5652.285 kb on - strand at 5652.285 kb on - strand at 5652.312 kb on + strand at 5652.361 kb on + strand at 5652.361 kb on + strand at 5652.361 kb on + strand at 5652.362 kb on - strand at 5652.362 kb on - strand at 5652.362 kb on - strand at 5652.408 kb on - strand at 5652.408 kb on - strand at 5652.493 kb on + strand at 5652.494 kb on - strand at 5652.506 kb on - strand at 5652.506 kb on - strand at 5652.564 kb on + strand at 5652.564 kb on + strand at 5652.565 kb on + strand at 5652.565 kb on - strand at 5652.590 kb on - strand at 5652.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB remove 5,650,127 - +0.8 5,650,127 - -0.4 5,650,381 - QEN71_RS25405 0.23 -1.3 5,650,738 - QEN71_RS25405 0.63 -1.2 5,650,738 - QEN71_RS25405 0.63 -0.8 5,650,738 - QEN71_RS25405 0.63 -0.4 5,650,954 - QEN71_RS25405 0.88 -0.5 5,651,037 - -1.0 5,651,084 - -0.1 5,652,250 + -0.2 5,652,251 - +0.1 5,652,251 - +0.2 5,652,251 - -0.3 5,652,285 - +0.3 5,652,285 - -0.4 5,652,312 + +0.6 5,652,361 + +0.7 5,652,361 + -1.6 5,652,361 + +0.2 5,652,362 - +1.4 5,652,362 - -0.5 5,652,362 - -0.5 5,652,408 - -0.6 5,652,408 - -1.1 5,652,493 + +0.1 5,652,494 - -0.1 5,652,506 - -0.3 5,652,506 - -0.2 5,652,564 + +1.0 5,652,564 + -2.7 5,652,565 + +1.6 5,652,565 - -2.6 5,652,590 - -1.0 5,652,724 + -0.7
Or see this region's nucleotide sequence