Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17470

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS17460 and QEN71_RS17465 are separated by 8 nucleotidesQEN71_RS17465 and QEN71_RS17470 are separated by 32 nucleotidesQEN71_RS17470 and QEN71_RS17475 overlap by 20 nucleotidesQEN71_RS17475 and QEN71_RS17480 are separated by 19 nucleotides QEN71_RS17460: QEN71_RS17460 - pilus assembly protein TadG-related protein, at 3,885,417 to 3,886,910 _RS17460 QEN71_RS17465: QEN71_RS17465 - hypothetical protein, at 3,886,919 to 3,887,719 _RS17465 QEN71_RS17470: QEN71_RS17470 - hypothetical protein, at 3,887,752 to 3,888,417 _RS17470 QEN71_RS17475: QEN71_RS17475 - hypothetical protein, at 3,888,398 to 3,888,595 _RS17475 QEN71_RS17480: QEN71_RS17480 - Flp pilus assembly protein CpaB, at 3,888,615 to 3,889,601 _RS17480 Position (kb) 3887 3888 3889Strain fitness (log2 ratio) -2 -1 0 1 2at 3886.975 kb on + strandat 3886.976 kb on - strandat 3887.067 kb on - strand, within QEN71_RS17465at 3887.133 kb on - strand, within QEN71_RS17465at 3887.184 kb on + strand, within QEN71_RS17465at 3887.185 kb on - strand, within QEN71_RS17465at 3887.337 kb on - strand, within QEN71_RS17465at 3887.337 kb on - strand, within QEN71_RS17465at 3887.459 kb on - strand, within QEN71_RS17465at 3887.528 kb on - strand, within QEN71_RS17465at 3887.643 kb on - strandat 3887.643 kb on - strandat 3887.866 kb on + strand, within QEN71_RS17470at 3887.866 kb on + strand, within QEN71_RS17470at 3888.004 kb on + strand, within QEN71_RS17470at 3888.004 kb on + strand, within QEN71_RS17470at 3888.569 kb on + strand, within QEN71_RS17475at 3888.580 kb on - strandat 3888.580 kb on - strandat 3888.588 kb on + strandat 3888.711 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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3,886,975 + -0.1
3,886,976 - +0.6
3,887,067 - QEN71_RS17465 0.18 +0.2
3,887,133 - QEN71_RS17465 0.27 -0.2
3,887,184 + QEN71_RS17465 0.33 -1.9
3,887,185 - QEN71_RS17465 0.33 +0.1
3,887,337 - QEN71_RS17465 0.52 -1.5
3,887,337 - QEN71_RS17465 0.52 -1.8
3,887,459 - QEN71_RS17465 0.67 +0.1
3,887,528 - QEN71_RS17465 0.76 +0.4
3,887,643 - +0.8
3,887,643 - +0.9
3,887,866 + QEN71_RS17470 0.17 -1.0
3,887,866 + QEN71_RS17470 0.17 -1.5
3,888,004 + QEN71_RS17470 0.38 -1.6
3,888,004 + QEN71_RS17470 0.38 +1.7
3,888,569 + QEN71_RS17475 0.86 +2.0
3,888,580 - -0.9
3,888,580 - -0.9
3,888,588 + -0.3
3,888,711 + -0.4

Or see this region's nucleotide sequence