Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14710

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14705 and QEN71_RS14710 overlap by 4 nucleotidesQEN71_RS14710 and QEN71_RS14715 are separated by 155 nucleotides QEN71_RS14705: QEN71_RS14705 - cyclodeaminase, at 3,281,649 to 3,282,650 _RS14705 QEN71_RS14710: QEN71_RS14710 - hydroxyectoine utilization dehydratase EutB, at 3,282,647 to 3,283,639 _RS14710 QEN71_RS14715: QEN71_RS14715 - PLP-dependent aminotransferase family protein, at 3,283,795 to 3,285,216 _RS14715 Position (kb) 3282 3283 3284Strain fitness (log2 ratio) -1 0 1at 3281.910 kb on + strand, within QEN71_RS14705at 3282.470 kb on - strand, within QEN71_RS14705at 3282.470 kb on - strand, within QEN71_RS14705at 3282.700 kb on + strandat 3282.831 kb on + strand, within QEN71_RS14710at 3282.832 kb on - strand, within QEN71_RS14710at 3282.875 kb on + strand, within QEN71_RS14710at 3282.891 kb on - strand, within QEN71_RS14710at 3282.913 kb on + strand, within QEN71_RS14710at 3283.124 kb on - strand, within QEN71_RS14710at 3283.212 kb on + strand, within QEN71_RS14710at 3283.212 kb on + strand, within QEN71_RS14710at 3283.212 kb on + strand, within QEN71_RS14710at 3283.212 kb on + strand, within QEN71_RS14710at 3283.212 kb on + strand, within QEN71_RS14710at 3283.212 kb on + strand, within QEN71_RS14710at 3283.212 kb on + strand, within QEN71_RS14710at 3283.213 kb on - strand, within QEN71_RS14710at 3283.552 kb on + strandat 3283.656 kb on + strandat 3283.656 kb on + strandat 3283.657 kb on - strandat 3283.657 kb on - strandat 3283.725 kb on + strandat 3283.726 kb on - strandat 3283.747 kb on + strandat 3283.748 kb on - strandat 3283.862 kb on + strandat 3283.862 kb on + strandat 3283.863 kb on - strandat 3283.959 kb on + strand, within QEN71_RS14715at 3284.057 kb on + strand, within QEN71_RS14715at 3284.057 kb on + strand, within QEN71_RS14715at 3284.058 kb on - strand, within QEN71_RS14715at 3284.162 kb on - strand, within QEN71_RS14715at 3284.162 kb on - strand, within QEN71_RS14715at 3284.248 kb on - strand, within QEN71_RS14715at 3284.248 kb on - strand, within QEN71_RS14715at 3284.248 kb on - strand, within QEN71_RS14715at 3284.297 kb on + strand, within QEN71_RS14715at 3284.360 kb on + strand, within QEN71_RS14715at 3284.360 kb on + strand, within QEN71_RS14715at 3284.360 kb on + strand, within QEN71_RS14715at 3284.362 kb on + strand, within QEN71_RS14715at 3284.362 kb on + strand, within QEN71_RS14715at 3284.363 kb on - strand, within QEN71_RS14715at 3284.363 kb on - strand, within QEN71_RS14715at 3284.363 kb on - strand, within QEN71_RS14715at 3284.363 kb on - strand, within QEN71_RS14715at 3284.363 kb on - strand, within QEN71_RS14715at 3284.363 kb on - strand, within QEN71_RS14715at 3284.534 kb on + strand, within QEN71_RS14715at 3284.535 kb on - strand, within QEN71_RS14715at 3284.563 kb on - strand, within QEN71_RS14715

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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3,281,910 + QEN71_RS14705 0.26 -0.1
3,282,470 - QEN71_RS14705 0.82 -0.6
3,282,470 - QEN71_RS14705 0.82 -1.4
3,282,700 + +0.2
3,282,831 + QEN71_RS14710 0.19 -1.0
3,282,832 - QEN71_RS14710 0.19 -0.7
3,282,875 + QEN71_RS14710 0.23 -0.9
3,282,891 - QEN71_RS14710 0.25 -0.3
3,282,913 + QEN71_RS14710 0.27 -0.7
3,283,124 - QEN71_RS14710 0.48 +0.5
3,283,212 + QEN71_RS14710 0.57 -0.6
3,283,212 + QEN71_RS14710 0.57 +0.1
3,283,212 + QEN71_RS14710 0.57 +0.2
3,283,212 + QEN71_RS14710 0.57 -0.3
3,283,212 + QEN71_RS14710 0.57 +0.0
3,283,212 + QEN71_RS14710 0.57 -1.1
3,283,212 + QEN71_RS14710 0.57 +0.4
3,283,213 - QEN71_RS14710 0.57 -0.0
3,283,552 + -1.3
3,283,656 + -0.2
3,283,656 + +0.7
3,283,657 - -0.1
3,283,657 - -0.5
3,283,725 + -1.6
3,283,726 - -0.3
3,283,747 + +0.1
3,283,748 - +1.4
3,283,862 + -0.1
3,283,862 + -0.6
3,283,863 - -0.1
3,283,959 + QEN71_RS14715 0.12 +0.5
3,284,057 + QEN71_RS14715 0.18 -0.8
3,284,057 + QEN71_RS14715 0.18 +0.9
3,284,058 - QEN71_RS14715 0.18 +0.1
3,284,162 - QEN71_RS14715 0.26 +0.5
3,284,162 - QEN71_RS14715 0.26 -0.2
3,284,248 - QEN71_RS14715 0.32 +0.9
3,284,248 - QEN71_RS14715 0.32 -0.6
3,284,248 - QEN71_RS14715 0.32 +0.5
3,284,297 + QEN71_RS14715 0.35 +0.5
3,284,360 + QEN71_RS14715 0.40 +0.1
3,284,360 + QEN71_RS14715 0.40 -0.2
3,284,360 + QEN71_RS14715 0.40 -1.2
3,284,362 + QEN71_RS14715 0.40 -0.1
3,284,362 + QEN71_RS14715 0.40 +0.3
3,284,363 - QEN71_RS14715 0.40 -1.1
3,284,363 - QEN71_RS14715 0.40 -0.2
3,284,363 - QEN71_RS14715 0.40 +0.2
3,284,363 - QEN71_RS14715 0.40 +0.0
3,284,363 - QEN71_RS14715 0.40 -0.3
3,284,363 - QEN71_RS14715 0.40 +0.2
3,284,534 + QEN71_RS14715 0.52 -0.2
3,284,535 - QEN71_RS14715 0.52 +0.9
3,284,563 - QEN71_RS14715 0.54 -0.1

Or see this region's nucleotide sequence