Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12795

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12790 and QEN71_RS12795 are separated by 34 nucleotidesQEN71_RS12795 and QEN71_RS12800 are separated by 187 nucleotides QEN71_RS12790: QEN71_RS12790 - SDR family oxidoreductase, at 2,861,354 to 2,862,076 _RS12790 QEN71_RS12795: QEN71_RS12795 - hypothetical protein, at 2,862,111 to 2,862,467 _RS12795 QEN71_RS12800: QEN71_RS12800 - acyltransferase, at 2,862,655 to 2,863,884 _RS12800 Position (kb) 2862 2863Strain fitness (log2 ratio) -1 0 1 2at 2861.118 kb on - strandat 2861.242 kb on + strandat 2861.242 kb on + strandat 2861.245 kb on - strandat 2861.368 kb on + strandat 2861.582 kb on + strand, within QEN71_RS12790at 2861.583 kb on - strand, within QEN71_RS12790at 2861.653 kb on - strand, within QEN71_RS12790at 2861.892 kb on + strand, within QEN71_RS12790at 2861.894 kb on + strand, within QEN71_RS12790at 2861.894 kb on + strand, within QEN71_RS12790at 2862.271 kb on + strand, within QEN71_RS12795at 2862.272 kb on - strand, within QEN71_RS12795at 2862.448 kb on + strandat 2862.448 kb on + strandat 2862.448 kb on + strandat 2862.448 kb on + strandat 2862.450 kb on + strandat 2862.483 kb on + strandat 2862.645 kb on - strandat 2862.645 kb on - strandat 2862.756 kb on - strandat 2862.786 kb on - strand, within QEN71_RS12800at 2862.817 kb on - strand, within QEN71_RS12800at 2863.162 kb on - strand, within QEN71_RS12800at 2863.197 kb on - strand, within QEN71_RS12800at 2863.197 kb on - strand, within QEN71_RS12800at 2863.274 kb on + strand, within QEN71_RS12800at 2863.275 kb on - strand, within QEN71_RS12800at 2863.313 kb on + strand, within QEN71_RS12800at 2863.313 kb on + strand, within QEN71_RS12800at 2863.313 kb on + strand, within QEN71_RS12800at 2863.446 kb on - strand, within QEN71_RS12800

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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2,861,118 - -0.0
2,861,242 + -0.3
2,861,242 + +0.3
2,861,245 - -0.3
2,861,368 + -0.3
2,861,582 + QEN71_RS12790 0.32 +2.2
2,861,583 - QEN71_RS12790 0.32 -0.3
2,861,653 - QEN71_RS12790 0.41 +0.1
2,861,892 + QEN71_RS12790 0.74 +0.8
2,861,894 + QEN71_RS12790 0.75 +1.4
2,861,894 + QEN71_RS12790 0.75 +0.6
2,862,271 + QEN71_RS12795 0.45 +0.4
2,862,272 - QEN71_RS12795 0.45 -0.1
2,862,448 + -0.5
2,862,448 + +0.3
2,862,448 + -1.0
2,862,448 + -0.7
2,862,450 + -0.4
2,862,483 + -1.7
2,862,645 - +0.2
2,862,645 - +1.1
2,862,756 - -0.4
2,862,786 - QEN71_RS12800 0.11 +0.4
2,862,817 - QEN71_RS12800 0.13 +0.1
2,863,162 - QEN71_RS12800 0.41 +1.4
2,863,197 - QEN71_RS12800 0.44 -0.1
2,863,197 - QEN71_RS12800 0.44 +0.4
2,863,274 + QEN71_RS12800 0.50 -0.0
2,863,275 - QEN71_RS12800 0.50 -0.6
2,863,313 + QEN71_RS12800 0.53 -0.8
2,863,313 + QEN71_RS12800 0.53 +1.4
2,863,313 + QEN71_RS12800 0.53 +0.2
2,863,446 - QEN71_RS12800 0.64 +0.9

Or see this region's nucleotide sequence