Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11605

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11600 and QEN71_RS11605 are separated by 143 nucleotidesQEN71_RS11605 and QEN71_RS11610 are separated by 96 nucleotides QEN71_RS11600: QEN71_RS11600 - MFS transporter, at 2,586,009 to 2,587,337 _RS11600 QEN71_RS11605: QEN71_RS11605 - SDR family NAD(P)-dependent oxidoreductase, at 2,587,481 to 2,588,230 _RS11605 QEN71_RS11610: QEN71_RS11610 - LysR substrate-binding domain-containing protein, at 2,588,327 to 2,589,241 _RS11610 Position (kb) 2587 2588 2589Strain fitness (log2 ratio) -2 -1 0 1 2at 2586.538 kb on + strand, within QEN71_RS11600at 2586.538 kb on + strand, within QEN71_RS11600at 2586.538 kb on + strand, within QEN71_RS11600at 2586.538 kb on + strand, within QEN71_RS11600at 2586.539 kb on - strand, within QEN71_RS11600at 2586.539 kb on - strand, within QEN71_RS11600at 2586.539 kb on - strand, within QEN71_RS11600at 2586.694 kb on + strand, within QEN71_RS11600at 2586.694 kb on + strand, within QEN71_RS11600at 2586.695 kb on - strand, within QEN71_RS11600at 2586.695 kb on - strand, within QEN71_RS11600at 2586.717 kb on + strand, within QEN71_RS11600at 2586.717 kb on + strand, within QEN71_RS11600at 2586.718 kb on - strand, within QEN71_RS11600at 2586.901 kb on + strand, within QEN71_RS11600at 2586.957 kb on + strand, within QEN71_RS11600at 2586.961 kb on + strand, within QEN71_RS11600at 2586.961 kb on + strand, within QEN71_RS11600at 2586.961 kb on + strand, within QEN71_RS11600at 2586.962 kb on - strand, within QEN71_RS11600at 2586.962 kb on - strand, within QEN71_RS11600at 2586.962 kb on - strand, within QEN71_RS11600at 2586.962 kb on - strand, within QEN71_RS11600at 2587.094 kb on - strand, within QEN71_RS11600at 2587.094 kb on - strand, within QEN71_RS11600at 2587.110 kb on - strand, within QEN71_RS11600at 2587.126 kb on + strand, within QEN71_RS11600at 2587.126 kb on + strand, within QEN71_RS11600at 2587.127 kb on - strand, within QEN71_RS11600at 2587.198 kb on + strand, within QEN71_RS11600at 2587.255 kb on + strandat 2587.255 kb on + strandat 2587.255 kb on + strandat 2587.406 kb on - strandat 2587.408 kb on - strandat 2587.530 kb on + strandat 2587.530 kb on + strandat 2587.530 kb on + strandat 2587.530 kb on + strandat 2587.531 kb on - strandat 2587.768 kb on - strand, within QEN71_RS11605at 2587.878 kb on + strand, within QEN71_RS11605at 2587.878 kb on + strand, within QEN71_RS11605at 2587.878 kb on + strand, within QEN71_RS11605at 2587.878 kb on + strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2588.026 kb on + strand, within QEN71_RS11605at 2588.026 kb on + strand, within QEN71_RS11605at 2588.026 kb on + strand, within QEN71_RS11605at 2588.253 kb on + strandat 2588.253 kb on + strandat 2588.253 kb on + strandat 2588.253 kb on + strandat 2588.254 kb on - strandat 2588.254 kb on - strandat 2588.254 kb on - strandat 2588.254 kb on - strandat 2588.254 kb on - strandat 2588.259 kb on + strandat 2588.260 kb on - strandat 2588.402 kb on + strandat 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.730 kb on + strand, within QEN71_RS11610at 2588.731 kb on - strand, within QEN71_RS11610at 2588.826 kb on + strand, within QEN71_RS11610at 2588.826 kb on + strand, within QEN71_RS11610at 2588.826 kb on + strand, within QEN71_RS11610at 2588.827 kb on - strand, within QEN71_RS11610at 2588.827 kb on - strand, within QEN71_RS11610at 2588.829 kb on + strand, within QEN71_RS11610at 2588.829 kb on + strand, within QEN71_RS11610at 2588.857 kb on - strand, within QEN71_RS11610at 2589.029 kb on + strand, within QEN71_RS11610at 2589.042 kb on + strand, within QEN71_RS11610at 2589.043 kb on - strand, within QEN71_RS11610at 2589.043 kb on - strand, within QEN71_RS11610at 2589.214 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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2,586,538 + QEN71_RS11600 0.40 -0.9
2,586,538 + QEN71_RS11600 0.40 +0.3
2,586,538 + QEN71_RS11600 0.40 +1.5
2,586,538 + QEN71_RS11600 0.40 -0.0
2,586,539 - QEN71_RS11600 0.40 -0.6
2,586,539 - QEN71_RS11600 0.40 -0.2
2,586,539 - QEN71_RS11600 0.40 -0.5
2,586,694 + QEN71_RS11600 0.52 -1.0
2,586,694 + QEN71_RS11600 0.52 -0.9
2,586,695 - QEN71_RS11600 0.52 -0.0
2,586,695 - QEN71_RS11600 0.52 +0.3
2,586,717 + QEN71_RS11600 0.53 -0.4
2,586,717 + QEN71_RS11600 0.53 +0.5
2,586,718 - QEN71_RS11600 0.53 -0.8
2,586,901 + QEN71_RS11600 0.67 -0.1
2,586,957 + QEN71_RS11600 0.71 +0.8
2,586,961 + QEN71_RS11600 0.72 -0.9
2,586,961 + QEN71_RS11600 0.72 -0.9
2,586,961 + QEN71_RS11600 0.72 +0.1
2,586,962 - QEN71_RS11600 0.72 -0.3
2,586,962 - QEN71_RS11600 0.72 +0.1
2,586,962 - QEN71_RS11600 0.72 +0.2
2,586,962 - QEN71_RS11600 0.72 -2.3
2,587,094 - QEN71_RS11600 0.82 +1.1
2,587,094 - QEN71_RS11600 0.82 +0.6
2,587,110 - QEN71_RS11600 0.83 -0.4
2,587,126 + QEN71_RS11600 0.84 +0.1
2,587,126 + QEN71_RS11600 0.84 +0.5
2,587,127 - QEN71_RS11600 0.84 -0.1
2,587,198 + QEN71_RS11600 0.89 -0.4
2,587,255 + +0.5
2,587,255 + -0.1
2,587,255 + +0.8
2,587,406 - +1.1
2,587,408 - -0.1
2,587,530 + -0.9
2,587,530 + -0.0
2,587,530 + +0.3
2,587,530 + +0.9
2,587,531 - -2.6
2,587,768 - QEN71_RS11605 0.38 -0.3
2,587,878 + QEN71_RS11605 0.53 -1.1
2,587,878 + QEN71_RS11605 0.53 +1.9
2,587,878 + QEN71_RS11605 0.53 +1.0
2,587,878 + QEN71_RS11605 0.53 +0.6
2,587,879 - QEN71_RS11605 0.53 +0.8
2,587,879 - QEN71_RS11605 0.53 -0.2
2,587,879 - QEN71_RS11605 0.53 -2.4
2,587,879 - QEN71_RS11605 0.53 -0.7
2,587,879 - QEN71_RS11605 0.53 -1.3
2,588,026 + QEN71_RS11605 0.73 +0.5
2,588,026 + QEN71_RS11605 0.73 -0.9
2,588,026 + QEN71_RS11605 0.73 -1.4
2,588,253 + +0.3
2,588,253 + +2.5
2,588,253 + -0.9
2,588,253 + +0.7
2,588,254 - -0.2
2,588,254 - -1.3
2,588,254 - +0.2
2,588,254 - -0.3
2,588,254 - -0.4
2,588,259 + +0.4
2,588,260 - -0.1
2,588,402 + -0.6
2,588,577 + QEN71_RS11610 0.27 -0.0
2,588,577 + QEN71_RS11610 0.27 +0.0
2,588,577 + QEN71_RS11610 0.27 +0.4
2,588,577 + QEN71_RS11610 0.27 +0.7
2,588,577 + QEN71_RS11610 0.27 +0.2
2,588,577 + QEN71_RS11610 0.27 +0.4
2,588,577 + QEN71_RS11610 0.27 -0.5
2,588,578 - QEN71_RS11610 0.27 -0.5
2,588,578 - QEN71_RS11610 0.27 -1.5
2,588,578 - QEN71_RS11610 0.27 -0.8
2,588,578 - QEN71_RS11610 0.27 +1.0
2,588,578 - QEN71_RS11610 0.27 +0.2
2,588,578 - QEN71_RS11610 0.27 +0.2
2,588,578 - QEN71_RS11610 0.27 -0.6
2,588,578 - QEN71_RS11610 0.27 +0.2
2,588,578 - QEN71_RS11610 0.27 +0.0
2,588,578 - QEN71_RS11610 0.27 +0.4
2,588,578 - QEN71_RS11610 0.27 -0.5
2,588,578 - QEN71_RS11610 0.27 -0.4
2,588,730 + QEN71_RS11610 0.44 +2.5
2,588,731 - QEN71_RS11610 0.44 +0.3
2,588,826 + QEN71_RS11610 0.55 +0.9
2,588,826 + QEN71_RS11610 0.55 +0.6
2,588,826 + QEN71_RS11610 0.55 -0.7
2,588,827 - QEN71_RS11610 0.55 -0.1
2,588,827 - QEN71_RS11610 0.55 -2.1
2,588,829 + QEN71_RS11610 0.55 -0.2
2,588,829 + QEN71_RS11610 0.55 +0.8
2,588,857 - QEN71_RS11610 0.58 +0.9
2,589,029 + QEN71_RS11610 0.77 -1.3
2,589,042 + QEN71_RS11610 0.78 +0.1
2,589,043 - QEN71_RS11610 0.78 -1.0
2,589,043 - QEN71_RS11610 0.78 +0.4
2,589,214 + +0.2

Or see this region's nucleotide sequence