Experiment: Filtered_supernatant_MT80_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS11600 and QEN71_RS11605 are separated by 143 nucleotides QEN71_RS11605 and QEN71_RS11610 are separated by 96 nucleotides
QEN71_RS11600: QEN71_RS11600 - MFS transporter, at 2,586,009 to 2,587,337
_RS11600
QEN71_RS11605: QEN71_RS11605 - SDR family NAD(P)-dependent oxidoreductase, at 2,587,481 to 2,588,230
_RS11605
QEN71_RS11610: QEN71_RS11610 - LysR substrate-binding domain-containing protein, at 2,588,327 to 2,589,241
_RS11610
Position (kb)
2587
2588
2589 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2586.538 kb on + strand, within QEN71_RS11600 at 2586.538 kb on + strand, within QEN71_RS11600 at 2586.538 kb on + strand, within QEN71_RS11600 at 2586.538 kb on + strand, within QEN71_RS11600 at 2586.539 kb on - strand, within QEN71_RS11600 at 2586.539 kb on - strand, within QEN71_RS11600 at 2586.539 kb on - strand, within QEN71_RS11600 at 2586.694 kb on + strand, within QEN71_RS11600 at 2586.694 kb on + strand, within QEN71_RS11600 at 2586.695 kb on - strand, within QEN71_RS11600 at 2586.695 kb on - strand, within QEN71_RS11600 at 2586.717 kb on + strand, within QEN71_RS11600 at 2586.717 kb on + strand, within QEN71_RS11600 at 2586.718 kb on - strand, within QEN71_RS11600 at 2586.901 kb on + strand, within QEN71_RS11600 at 2586.957 kb on + strand, within QEN71_RS11600 at 2586.961 kb on + strand, within QEN71_RS11600 at 2586.961 kb on + strand, within QEN71_RS11600 at 2586.961 kb on + strand, within QEN71_RS11600 at 2586.962 kb on - strand, within QEN71_RS11600 at 2586.962 kb on - strand, within QEN71_RS11600 at 2586.962 kb on - strand, within QEN71_RS11600 at 2586.962 kb on - strand, within QEN71_RS11600 at 2587.094 kb on - strand, within QEN71_RS11600 at 2587.094 kb on - strand, within QEN71_RS11600 at 2587.110 kb on - strand, within QEN71_RS11600 at 2587.126 kb on + strand, within QEN71_RS11600 at 2587.126 kb on + strand, within QEN71_RS11600 at 2587.127 kb on - strand, within QEN71_RS11600 at 2587.198 kb on + strand, within QEN71_RS11600 at 2587.255 kb on + strand at 2587.255 kb on + strand at 2587.255 kb on + strand at 2587.406 kb on - strand at 2587.408 kb on - strand at 2587.530 kb on + strand at 2587.530 kb on + strand at 2587.530 kb on + strand at 2587.530 kb on + strand at 2587.531 kb on - strand at 2587.768 kb on - strand, within QEN71_RS11605 at 2587.878 kb on + strand, within QEN71_RS11605 at 2587.878 kb on + strand, within QEN71_RS11605 at 2587.878 kb on + strand, within QEN71_RS11605 at 2587.878 kb on + strand, within QEN71_RS11605 at 2587.879 kb on - strand, within QEN71_RS11605 at 2587.879 kb on - strand, within QEN71_RS11605 at 2587.879 kb on - strand, within QEN71_RS11605 at 2587.879 kb on - strand, within QEN71_RS11605 at 2587.879 kb on - strand, within QEN71_RS11605 at 2588.026 kb on + strand, within QEN71_RS11605 at 2588.026 kb on + strand, within QEN71_RS11605 at 2588.026 kb on + strand, within QEN71_RS11605 at 2588.253 kb on + strand at 2588.253 kb on + strand at 2588.253 kb on + strand at 2588.253 kb on + strand at 2588.254 kb on - strand at 2588.254 kb on - strand at 2588.254 kb on - strand at 2588.254 kb on - strand at 2588.254 kb on - strand at 2588.259 kb on + strand at 2588.260 kb on - strand at 2588.402 kb on + strand at 2588.577 kb on + strand, within QEN71_RS11610 at 2588.577 kb on + strand, within QEN71_RS11610 at 2588.577 kb on + strand, within QEN71_RS11610 at 2588.577 kb on + strand, within QEN71_RS11610 at 2588.577 kb on + strand, within QEN71_RS11610 at 2588.577 kb on + strand, within QEN71_RS11610 at 2588.577 kb on + strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.578 kb on - strand, within QEN71_RS11610 at 2588.730 kb on + strand, within QEN71_RS11610 at 2588.731 kb on - strand, within QEN71_RS11610 at 2588.826 kb on + strand, within QEN71_RS11610 at 2588.826 kb on + strand, within QEN71_RS11610 at 2588.826 kb on + strand, within QEN71_RS11610 at 2588.827 kb on - strand, within QEN71_RS11610 at 2588.827 kb on - strand, within QEN71_RS11610 at 2588.829 kb on + strand, within QEN71_RS11610 at 2588.829 kb on + strand, within QEN71_RS11610 at 2588.857 kb on - strand, within QEN71_RS11610 at 2589.029 kb on + strand, within QEN71_RS11610 at 2589.042 kb on + strand, within QEN71_RS11610 at 2589.043 kb on - strand, within QEN71_RS11610 at 2589.043 kb on - strand, within QEN71_RS11610 at 2589.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB remove 2,586,538 + QEN71_RS11600 0.40 -0.9 2,586,538 + QEN71_RS11600 0.40 +0.3 2,586,538 + QEN71_RS11600 0.40 +1.5 2,586,538 + QEN71_RS11600 0.40 -0.0 2,586,539 - QEN71_RS11600 0.40 -0.6 2,586,539 - QEN71_RS11600 0.40 -0.2 2,586,539 - QEN71_RS11600 0.40 -0.5 2,586,694 + QEN71_RS11600 0.52 -1.0 2,586,694 + QEN71_RS11600 0.52 -0.9 2,586,695 - QEN71_RS11600 0.52 -0.0 2,586,695 - QEN71_RS11600 0.52 +0.3 2,586,717 + QEN71_RS11600 0.53 -0.4 2,586,717 + QEN71_RS11600 0.53 +0.5 2,586,718 - QEN71_RS11600 0.53 -0.8 2,586,901 + QEN71_RS11600 0.67 -0.1 2,586,957 + QEN71_RS11600 0.71 +0.8 2,586,961 + QEN71_RS11600 0.72 -0.9 2,586,961 + QEN71_RS11600 0.72 -0.9 2,586,961 + QEN71_RS11600 0.72 +0.1 2,586,962 - QEN71_RS11600 0.72 -0.3 2,586,962 - QEN71_RS11600 0.72 +0.1 2,586,962 - QEN71_RS11600 0.72 +0.2 2,586,962 - QEN71_RS11600 0.72 -2.3 2,587,094 - QEN71_RS11600 0.82 +1.1 2,587,094 - QEN71_RS11600 0.82 +0.6 2,587,110 - QEN71_RS11600 0.83 -0.4 2,587,126 + QEN71_RS11600 0.84 +0.1 2,587,126 + QEN71_RS11600 0.84 +0.5 2,587,127 - QEN71_RS11600 0.84 -0.1 2,587,198 + QEN71_RS11600 0.89 -0.4 2,587,255 + +0.5 2,587,255 + -0.1 2,587,255 + +0.8 2,587,406 - +1.1 2,587,408 - -0.1 2,587,530 + -0.9 2,587,530 + -0.0 2,587,530 + +0.3 2,587,530 + +0.9 2,587,531 - -2.6 2,587,768 - QEN71_RS11605 0.38 -0.3 2,587,878 + QEN71_RS11605 0.53 -1.1 2,587,878 + QEN71_RS11605 0.53 +1.9 2,587,878 + QEN71_RS11605 0.53 +1.0 2,587,878 + QEN71_RS11605 0.53 +0.6 2,587,879 - QEN71_RS11605 0.53 +0.8 2,587,879 - QEN71_RS11605 0.53 -0.2 2,587,879 - QEN71_RS11605 0.53 -2.4 2,587,879 - QEN71_RS11605 0.53 -0.7 2,587,879 - QEN71_RS11605 0.53 -1.3 2,588,026 + QEN71_RS11605 0.73 +0.5 2,588,026 + QEN71_RS11605 0.73 -0.9 2,588,026 + QEN71_RS11605 0.73 -1.4 2,588,253 + +0.3 2,588,253 + +2.5 2,588,253 + -0.9 2,588,253 + +0.7 2,588,254 - -0.2 2,588,254 - -1.3 2,588,254 - +0.2 2,588,254 - -0.3 2,588,254 - -0.4 2,588,259 + +0.4 2,588,260 - -0.1 2,588,402 + -0.6 2,588,577 + QEN71_RS11610 0.27 -0.0 2,588,577 + QEN71_RS11610 0.27 +0.0 2,588,577 + QEN71_RS11610 0.27 +0.4 2,588,577 + QEN71_RS11610 0.27 +0.7 2,588,577 + QEN71_RS11610 0.27 +0.2 2,588,577 + QEN71_RS11610 0.27 +0.4 2,588,577 + QEN71_RS11610 0.27 -0.5 2,588,578 - QEN71_RS11610 0.27 -0.5 2,588,578 - QEN71_RS11610 0.27 -1.5 2,588,578 - QEN71_RS11610 0.27 -0.8 2,588,578 - QEN71_RS11610 0.27 +1.0 2,588,578 - QEN71_RS11610 0.27 +0.2 2,588,578 - QEN71_RS11610 0.27 +0.2 2,588,578 - QEN71_RS11610 0.27 -0.6 2,588,578 - QEN71_RS11610 0.27 +0.2 2,588,578 - QEN71_RS11610 0.27 +0.0 2,588,578 - QEN71_RS11610 0.27 +0.4 2,588,578 - QEN71_RS11610 0.27 -0.5 2,588,578 - QEN71_RS11610 0.27 -0.4 2,588,730 + QEN71_RS11610 0.44 +2.5 2,588,731 - QEN71_RS11610 0.44 +0.3 2,588,826 + QEN71_RS11610 0.55 +0.9 2,588,826 + QEN71_RS11610 0.55 +0.6 2,588,826 + QEN71_RS11610 0.55 -0.7 2,588,827 - QEN71_RS11610 0.55 -0.1 2,588,827 - QEN71_RS11610 0.55 -2.1 2,588,829 + QEN71_RS11610 0.55 -0.2 2,588,829 + QEN71_RS11610 0.55 +0.8 2,588,857 - QEN71_RS11610 0.58 +0.9 2,589,029 + QEN71_RS11610 0.77 -1.3 2,589,042 + QEN71_RS11610 0.78 +0.1 2,589,043 - QEN71_RS11610 0.78 -1.0 2,589,043 - QEN71_RS11610 0.78 +0.4 2,589,214 + +0.2
Or see this region's nucleotide sequence