Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10435

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10430 and QEN71_RS10435 are separated by 1 nucleotidesQEN71_RS10435 and QEN71_RS10440 overlap by 4 nucleotidesQEN71_RS10440 and QEN71_RS10445 are separated by 4 nucleotides QEN71_RS10430: QEN71_RS10430 - nitrate reductase subunit beta, at 2,313,312 to 2,314,838 _RS10430 QEN71_RS10435: QEN71_RS10435 - nitrate reductase molybdenum cofactor assembly chaperone, at 2,314,840 to 2,315,568 _RS10435 QEN71_RS10440: QEN71_RS10440 - respiratory nitrate reductase subunit gamma, at 2,315,565 to 2,316,248 _RS10440 QEN71_RS10445: QEN71_RS10445 - peptidylprolyl isomerase, at 2,316,253 to 2,317,032 _RS10445 Position (kb) 2314 2315 2316Strain fitness (log2 ratio) -1 0 1 2at 2313.844 kb on - strand, within QEN71_RS10430at 2313.912 kb on + strand, within QEN71_RS10430at 2313.912 kb on + strand, within QEN71_RS10430at 2313.993 kb on + strand, within QEN71_RS10430at 2314.076 kb on + strand, within QEN71_RS10430at 2314.076 kb on + strand, within QEN71_RS10430at 2314.076 kb on + strand, within QEN71_RS10430at 2314.076 kb on + strand, within QEN71_RS10430at 2314.077 kb on - strand, within QEN71_RS10430at 2314.113 kb on + strand, within QEN71_RS10430at 2314.434 kb on + strand, within QEN71_RS10430at 2314.435 kb on - strand, within QEN71_RS10430at 2314.473 kb on + strand, within QEN71_RS10430at 2314.638 kb on + strand, within QEN71_RS10430at 2314.638 kb on + strand, within QEN71_RS10430at 2314.639 kb on - strand, within QEN71_RS10430at 2314.639 kb on - strand, within QEN71_RS10430at 2314.639 kb on - strand, within QEN71_RS10430at 2314.639 kb on - strand, within QEN71_RS10430at 2314.702 kb on - strandat 2314.903 kb on + strandat 2315.050 kb on + strand, within QEN71_RS10435at 2315.051 kb on - strand, within QEN71_RS10435at 2315.159 kb on - strand, within QEN71_RS10435at 2315.159 kb on - strand, within QEN71_RS10435at 2315.203 kb on + strand, within QEN71_RS10435at 2315.225 kb on - strand, within QEN71_RS10435at 2315.225 kb on - strand, within QEN71_RS10435at 2315.393 kb on + strand, within QEN71_RS10435at 2315.393 kb on + strand, within QEN71_RS10435at 2315.601 kb on + strandat 2315.607 kb on + strandat 2315.607 kb on + strandat 2315.608 kb on - strandat 2315.608 kb on - strandat 2315.664 kb on + strand, within QEN71_RS10440at 2315.664 kb on + strand, within QEN71_RS10440at 2315.664 kb on + strand, within QEN71_RS10440at 2316.117 kb on + strand, within QEN71_RS10440at 2316.167 kb on + strand, within QEN71_RS10440at 2316.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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2,313,844 - QEN71_RS10430 0.35 +1.0
2,313,912 + QEN71_RS10430 0.39 -0.4
2,313,912 + QEN71_RS10430 0.39 +0.4
2,313,993 + QEN71_RS10430 0.45 +1.2
2,314,076 + QEN71_RS10430 0.50 +0.2
2,314,076 + QEN71_RS10430 0.50 -0.1
2,314,076 + QEN71_RS10430 0.50 -0.0
2,314,076 + QEN71_RS10430 0.50 +0.1
2,314,077 - QEN71_RS10430 0.50 +0.2
2,314,113 + QEN71_RS10430 0.52 +0.6
2,314,434 + QEN71_RS10430 0.73 -0.2
2,314,435 - QEN71_RS10430 0.74 +0.7
2,314,473 + QEN71_RS10430 0.76 -0.3
2,314,638 + QEN71_RS10430 0.87 -0.4
2,314,638 + QEN71_RS10430 0.87 -0.9
2,314,639 - QEN71_RS10430 0.87 +0.5
2,314,639 - QEN71_RS10430 0.87 +0.3
2,314,639 - QEN71_RS10430 0.87 -0.6
2,314,639 - QEN71_RS10430 0.87 +0.7
2,314,702 - +1.2
2,314,903 + -0.7
2,315,050 + QEN71_RS10435 0.29 -1.7
2,315,051 - QEN71_RS10435 0.29 +0.9
2,315,159 - QEN71_RS10435 0.44 +1.2
2,315,159 - QEN71_RS10435 0.44 -0.7
2,315,203 + QEN71_RS10435 0.50 +0.7
2,315,225 - QEN71_RS10435 0.53 +0.9
2,315,225 - QEN71_RS10435 0.53 +0.4
2,315,393 + QEN71_RS10435 0.76 +0.4
2,315,393 + QEN71_RS10435 0.76 +0.9
2,315,601 + -0.2
2,315,607 + +0.7
2,315,607 + -0.2
2,315,608 - -0.9
2,315,608 - -0.4
2,315,664 + QEN71_RS10440 0.14 +0.2
2,315,664 + QEN71_RS10440 0.14 +0.6
2,315,664 + QEN71_RS10440 0.14 -1.2
2,316,117 + QEN71_RS10440 0.81 -0.1
2,316,167 + QEN71_RS10440 0.88 +0.3
2,316,226 - +2.0

Or see this region's nucleotide sequence