Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08510

Experiment: Filtered_supernatant_MT80_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08505 and QEN71_RS08510 are separated by 3 nucleotidesQEN71_RS08510 and QEN71_RS08515 are separated by 480 nucleotides QEN71_RS08505: QEN71_RS08505 - undecaprenyl-phosphate glucose phosphotransferase, at 1,899,389 to 1,900,759 _RS08505 QEN71_RS08510: QEN71_RS08510 - helix-turn-helix domain-containing protein, at 1,900,763 to 1,901,764 _RS08510 QEN71_RS08515: QEN71_RS08515 - porin, at 1,902,245 to 1,903,396 _RS08515 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -2 -1 0 1at 1899.882 kb on - strand, within QEN71_RS08505at 1900.258 kb on - strand, within QEN71_RS08505at 1900.851 kb on - strandat 1901.032 kb on - strand, within QEN71_RS08510at 1901.096 kb on - strand, within QEN71_RS08510at 1901.534 kb on + strand, within QEN71_RS08510at 1901.669 kb on + strandat 1902.539 kb on + strand, within QEN71_RS08515at 1902.547 kb on + strand, within QEN71_RS08515at 1902.648 kb on - strand, within QEN71_RS08515at 1902.648 kb on - strand, within QEN71_RS08515at 1902.716 kb on + strand, within QEN71_RS08515at 1902.717 kb on - strand, within QEN71_RS08515at 1902.758 kb on + strand, within QEN71_RS08515at 1902.758 kb on + strand, within QEN71_RS08515at 1902.758 kb on + strand, within QEN71_RS08515

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT80_in_LB
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1,899,882 - QEN71_RS08505 0.36 -1.5
1,900,258 - QEN71_RS08505 0.63 -1.4
1,900,851 - +0.5
1,901,032 - QEN71_RS08510 0.27 -1.2
1,901,096 - QEN71_RS08510 0.33 +0.8
1,901,534 + QEN71_RS08510 0.77 +0.2
1,901,669 + -1.3
1,902,539 + QEN71_RS08515 0.26 -0.0
1,902,547 + QEN71_RS08515 0.26 -2.1
1,902,648 - QEN71_RS08515 0.35 -0.8
1,902,648 - QEN71_RS08515 0.35 -0.2
1,902,716 + QEN71_RS08515 0.41 +0.1
1,902,717 - QEN71_RS08515 0.41 +0.6
1,902,758 + QEN71_RS08515 0.45 -0.6
1,902,758 + QEN71_RS08515 0.45 -0.2
1,902,758 + QEN71_RS08515 0.45 -0.0

Or see this region's nucleotide sequence